Linkage Disequilibrium Shrinkage Estimation for Polyploids
☆13Sep 9, 2026Updated last month
Alternatives and similar repositories for ldsep
Users that are interested in ldsep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Flexible Genotyping of Polyploids using Next Generation Sequencing Data☆33Mar 17, 2026Updated 7 months ago
- GWAS software that can handle autopolyploids☆36Sep 21, 2026Updated 3 weeks ago
- Estimate linkage disequilibrium between unphased loci☆11Jun 9, 2015Updated 11 years ago
- SNP genotyping in polyploids☆17Aug 12, 2020Updated 6 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆17Sep 24, 2026Updated 3 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- R functions related to pedigrees☆14Sep 29, 2025Updated last year
- Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝☆33Mar 23, 2026Updated 6 months ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Ploidy agnostic phasing pipeline and algorithm☆51Jan 3, 2024Updated 2 years ago
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆13Mar 31, 2021Updated 5 years ago
- KaryoScope: rapid, alignment-free sequence annotation for the pangenome era☆28Sep 14, 2026Updated last month
- Rust binding for WFA2-lib☆10Jun 7, 2022Updated 4 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Nov 9, 2019Updated 6 years ago
- ☆118Oct 1, 2026Updated 2 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Fast API server for calculating linkage disequilibrium☆20Apr 24, 2025Updated last year
- PhaseGrass, a reference-based phasing workflow generating chromosome-level haplotype-resolved diploid assembly for highly heterozygous ge…☆17Jun 2, 2026Updated 4 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 11 months ago
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 11 years ago
- PCA in rust☆16Jul 30, 2023Updated 3 years ago
- ☆11Aug 2, 2025Updated last year
- Added functions for Echidna in R☆11Apr 14, 2023Updated 3 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 11 months ago
- Package for multi-environment trial analysis☆40Oct 16, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package that constructs (non)additive genetic relationship matrices, and their inverses, from a pedigree to be used in linear mixed eff…☆23Sep 4, 2024Updated 2 years ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)☆14Sep 17, 2022Updated 4 years ago
- A Read Aligner with Multi-Genome References☆13Mar 25, 2025Updated last year
- ☆10Nov 4, 2021Updated 4 years ago
- Convert HAL to VG☆24Oct 7, 2026Updated last week
- convert variation graph alignments to coverage maps over nodes☆28Jan 21, 2026Updated 8 months ago
- MegaSSR is a robust online server that identifies Simple Sequence Repeats (SSR) and enables the design of SSR markers in high-throughput …☆11Nov 25, 2024Updated last year
- PANPROVA: PANgenomic PROkaryotic eVolution of full Assemblies☆10Jun 14, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- ☆27Jun 27, 2026Updated 3 months ago
- miredo for android☆11Jan 5, 2014Updated 12 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- Python Breeding Optimizer and Simulator: A Python library for simulating and optimizing breeding pipelines.☆15Dec 10, 2024Updated last year
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago
- QTL analysis in diallel populations☆13Mar 13, 2026Updated 7 months ago