pengzhangzhi / ab_optLinks
Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
☆60Updated last year
Alternatives and similar repositories for ab_opt
Users that are interested in ab_opt are comparing it to the libraries listed below
Sorting:
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆44Updated 7 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆82Updated last month
- This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)☆40Updated last year
- Official repository of EnzymeFlow☆91Updated 7 months ago
- Code for humanization of antibody and nanobody☆44Updated 7 months ago
- ☆70Updated 3 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆110Updated 3 weeks ago
- ☆100Updated last month
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆40Updated 7 months ago
- Official repository of GENzyme☆53Updated 7 months ago
- Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”☆37Updated 4 months ago
- Structure-conditioned masked language modeling for protein sequence design☆64Updated last year
- ☆81Updated last month
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated 11 months ago
- ☆70Updated 5 months ago
- ☆91Updated 9 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆63Updated this week
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆45Updated 6 months ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆113Updated 4 months ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆60Updated last month
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆78Updated last year
- ☆65Updated last year
- Evaluating Protein Binding Interfaces with Transformer Networks☆46Updated last year
- ☆115Updated last month
- ☆43Updated 10 months ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆131Updated last week
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆51Updated last month
- This repository implements Gibbs sampling with Graph-based Smoothing☆39Updated last year
- ☆109Updated 2 years ago
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆73Updated 2 months ago