ManchesterBioinference / IntegratingATAC-RNA-HiCLinks
scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
☆24Updated 2 years ago
Alternatives and similar repositories for IntegratingATAC-RNA-HiC
Users that are interested in IntegratingATAC-RNA-HiC are comparing it to the libraries listed below
Sorting:
- ATAC-seq processing pipeline☆34Updated 3 years ago
- Statistically Significant loops from HiChIP data☆44Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- ☆25Updated last year
- ☆18Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆25Updated last year
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- ☆27Updated 4 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆22Updated 6 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Updated 2 years ago
- ☆51Updated last year
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- ☆17Updated 6 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆33Updated 3 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 5 months ago
- Single Cell Analysis Automated Workflow☆27Updated 2 years ago
- Chromatin States Map in mouse embryonic stem cell☆15Updated 7 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- An R package for time course sequencing data analysis☆20Updated 2 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- scRNA-seq Shiny App☆14Updated 2 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 4 years ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Updated 4 years ago