ManchesterBioinference / IntegratingATAC-RNA-HiCLinks
scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
☆24Updated 2 years ago
Alternatives and similar repositories for IntegratingATAC-RNA-HiC
Users that are interested in IntegratingATAC-RNA-HiC are comparing it to the libraries listed below
Sorting:
- ☆17Updated 4 years ago
- Analysis pipeline for our circSC manuscript☆13Updated 3 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 10 months ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated 2 months ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆15Updated 3 years ago
- ☆17Updated 2 years ago
- workshop website on readthedocs☆19Updated last month
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆19Updated 3 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆10Updated 5 years ago
- ☆49Updated 10 months ago
- Main repository for Drews et al. (Nature, 2022)☆41Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- ☆23Updated 4 years ago
- ☆12Updated 5 years ago
- Statistically Significant loops from HiChIP data☆43Updated last year
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆15Updated 4 years ago
- ☆20Updated last year
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- ☆10Updated 3 weeks ago
- ☆27Updated 3 years ago
- ☆20Updated last year
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆27Updated last month
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated last month
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- ☆25Updated last year