ManchesterBioinference / IntegratingATAC-RNA-HiCLinks
scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
☆25Updated 2 years ago
Alternatives and similar repositories for IntegratingATAC-RNA-HiC
Users that are interested in IntegratingATAC-RNA-HiC are comparing it to the libraries listed below
Sorting:
- ATAC-seq processing pipeline☆34Updated 3 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- ☆51Updated last year
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- ☆18Updated 4 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- ☆24Updated this week
- Single Cell Analysis Automated Workflow☆28Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- ☆47Updated 9 months ago
- ☆26Updated 2 years ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Updated 4 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆22Updated 6 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆34Updated 6 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆31Updated 6 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 2 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Statistically Significant loops from HiChIP data☆46Updated last year
- ☆19Updated 2 years ago
- ☆28Updated 4 years ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- Chromatin States Map in mouse embryonic stem cell☆17Updated 7 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆19Updated 5 months ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆33Updated 3 years ago
- binned motif enrichment analysis and visualisation☆42Updated last month
- RNA editing tests☆17Updated 5 years ago