Alternatives and similar repositories for IntroToHPC:

Users that are interested in IntroToHPC are comparing it to the libraries listed below

• griffithlab / pmbio.org
  Website for the precision medicine workshop
  ☆45Updated 4 months ago
• alexisvdb / singleCellHaystack
  Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
  ☆81Updated 6 months ago
• gaolabtools / scNanoGPS
  Single cell Nanopore sequencing data for Genotype and Phenotype
  ☆49Updated last week
• crazyhottommy / scATACutils
  R/Bioconductor package for working with 10x scATACseq data
  ☆39Updated last year
• YeoLab / outrigger
  Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data
  ☆65Updated 4 years ago
• montilab / BS831
  Course Materials for Genomics Data Mining
  ☆22Updated 2 months ago
• waterlandlab / CluBCpG
  Cluster-based analysis of CpG methylation
  ☆13Updated last year
• GreenleafLab / motifmatchr
  Fast motif matching in R
  ☆47Updated last year
• TrinityCTAT / ctat-mutations
  Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19
  ☆73Updated 8 months ago
• inutano / chip-atlas
  ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser
  ☆73Updated last week
• vierstralab / motif-clustering
  Clustering motif models to remove redundancy
  ☆40Updated last year
• cancerit / alleleCount
  Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…
  ☆44Updated 2 years ago
• hbctraining / Intro-to-peak-analysis
  An introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN / ATAC-seq
  ☆22Updated last month
• single-cell-genetics / vireo
  Demultiplexing pooled scRNA-seq data with or without genotype reference
  ☆83Updated 10 months ago
• saezlab / CARNIVAL
  CAusal Reasoning for Network Identification with integer VALue programming in R
  ☆57Updated last year
• GreenleafLab / chromVARmotifs
  R package with motifs for use with chromVAR
  ☆27Updated 7 years ago
• DataBiosphere / terra-docker
  ☆28Updated 2 weeks ago
• MarioniLab / DropletUtils
  Clone of the Bioconductor repository for the DropletUtils package.
  ☆57Updated 3 months ago
• raphael-group / hatchet
  HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…
  ☆69Updated last month
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆50Updated last year
• BUStools / BUS_notebooks_python
  ☆23Updated 5 years ago
• gofflab / developing_mouse_retina_scRNASeq
  10x single cell RNA-seq data from the developing mouse retina
  ☆16Updated 4 years ago
• tavareshugo / data-carpentry-rnaseq
  ☆22Updated 4 years ago
• TRON-Bioinformatics / EasyFuse
  EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.
  ☆57Updated 3 months ago
• nf-core / clipseq
  CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.
  ☆21Updated last week
• cellatlas / human
  ☆42Updated 5 months ago
• czbiohub-sf / cerebra
  A tool for fast and accurate summarizing of variant calling format (VCF) files
  ☆60Updated 2 years ago
• bigbioinformatics / single_cell_rna_seq_workshop
  repository for the single cell RNA-Seq workshop
  ☆27Updated 3 years ago
• Oshlack / JAFFA
  JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions
  ☆92Updated 7 months ago
• LuyiTian / FLAMES
  Full-length transcriptome splicing and mutation analysis
  ☆81Updated 9 months ago