TheJacksonLaboratory / jds-nf-workflowsLinks
The Jackson Laboratory Data Science Nextflow based analysis workflows
☆24Updated last month
Alternatives and similar repositories for jds-nf-workflows
Users that are interested in jds-nf-workflows are comparing it to the libraries listed below
Sorting:
- An R package for predicting HR deficiency from mutation contexts☆29Updated 8 months ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated last week
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 9 months ago
- A preprocessing and QC pipeline for HiChIP data☆40Updated 3 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆30Updated 7 months ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Genomic Association Tester☆32Updated 2 years ago
- Junction Based Analysis of Splicing Events for RNA-Seq☆32Updated last month
- ☆21Updated 2 weeks ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- ☆38Updated 4 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated last month
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- An R package to time somatic mutations☆64Updated 4 years ago
- Robust Allele Specific Quantification and quality controL☆40Updated 3 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- ☆72Updated 2 years ago
- Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.☆41Updated 4 years ago
- chia pet analysis software☆25Updated 6 years ago
- R package containing useful functions for mutational signature analysis☆84Updated this week
- ☆36Updated 6 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 9 months ago