The Jackson Laboratory Data Science Nextflow based analysis workflows
☆26Jun 5, 2026Updated last month
Alternatives and similar repositories for jds-nf-workflows
Users that are interested in jds-nf-workflows are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HPC and queue usage class syllabus☆16Sep 28, 2021Updated 4 years ago
- Methylatino phasing using PacBio CCS reads☆14Dec 13, 2024Updated last year
- Single nucleotide variant (SNV) detection and genotyping algorithm for single-cell DNA sequencing data☆14May 8, 2020Updated 6 years ago
- Pan gGnome Viewer☆10Jul 10, 2025Updated 11 months ago
- Compute the neighborhood consolidation matrix and identify SHRs☆14Jun 12, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- List of papers on deconvolution of cell types in bulk RNA-seq based on single-cell signatures☆18Aug 28, 2020Updated 5 years ago
- ☆13Nov 14, 2018Updated 7 years ago
- Machine learning workshop presented at GLBIO 2016☆12May 17, 2016Updated 10 years ago
- Extract modifed base call information from Guppy Fast5 files.☆14Mar 28, 2022Updated 4 years ago
- R code to work with the NIH RePORTER API☆11Feb 11, 2026Updated 4 months ago
- QDNAseq.hg38: QDNAseq bin annotation for the human genome build hg38☆19Dec 16, 2025Updated 6 months ago
- QTL analysis software for high-dimensional data and complex cross designs☆39Jun 27, 2026Updated last week
- ☆12Aug 23, 2018Updated 7 years ago
- association analysis of distance matrices using gradient forest approach☆16Oct 7, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA☆16Apr 13, 2021Updated 5 years ago
- The CanDIG v2 platform☆17Updated this week
- Cross-protein transfer learning for variant effect prediction☆21Sep 13, 2023Updated 2 years ago
- An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter☆14Jan 18, 2019Updated 7 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- Repository for signature genes from Immune Cell Atlas☆20Sep 25, 2019Updated 6 years ago
- This repo contains the knitr code for the paper: Gillespie, C. S., et al, 2010. Analysing yeast time course microarray data using BioCond…☆12Jan 25, 2016Updated 10 years ago
- Probabilistic pseudotime for single-cell RNA-seq data☆11Oct 6, 2017Updated 8 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆32Feb 9, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆21Apr 15, 2024Updated 2 years ago
- A tool for timing complex copy number gains in cancer.☆21Dec 4, 2025Updated 7 months ago
- PePPer - Personalized Perturbation Profiler☆11Oct 4, 2018Updated 7 years ago
- Genomic VCF to tab-separated values☆49May 23, 2026Updated last month
- ☆12Apr 26, 2020Updated 6 years ago
- Website for Introduction to Data Science at University of Edinburgh, 2020.☆11Jan 30, 2022Updated 4 years ago
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated 11 months ago
- Sandbox for playing with Neo4J and graph approaches to NLP☆12Jul 12, 2017Updated 8 years ago
- ☆34Jun 12, 2019Updated 7 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A library for GNU make to schedule rules as jobs with qsub or sbatch☆11Mar 7, 2013Updated 13 years ago
- Somatic workflow for Kids-First☆15May 11, 2026Updated last month
- CODEX data processing code☆12Jul 1, 2025Updated last year
- SUmmarizing Multiple Enrichment analysis Results☆10Nov 14, 2024Updated last year
- Multi-omics studies are available here☆53Jul 3, 2022Updated 4 years ago
- ☆13Sep 30, 2023Updated 2 years ago
- weather similarity page☆11May 25, 2021Updated 5 years ago