BIRSBiointegration / Hackathon

Related projects: ⓘ

• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆39Updated last year
• czbiohub-sf / tabula-muris-vignettes
  Examples analyses using the single-cell RNA-seq data from mouse cell atlases
  ☆22Updated 5 years ago
• LTLA / scRNAseq
  Clone of the Bioconductor repository for the scRNAseq package.
  ☆23Updated 2 months ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆39Updated 5 years ago
• SpatialTranscriptomicsResearch / st_viewer
  A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets
  ☆13Updated 3 years ago
• markrobinsonuzh / scRNAseq_clustering_comparison
  A study to compare methods for clustering of scRNA-seq data
  ☆41Updated 2 months ago
• Teichlab / cellity
  ☆35Updated 8 years ago
• quon-titative-biology / scAlign
  A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…
  ☆34Updated 2 years ago
• immunogenomics / masc
  MASC: Mixed-effects Association testing for Single Cells
  ☆15Updated 3 years ago
• SpatialTranscriptomicsResearch / std-nb
  Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018
  ☆21Updated 5 years ago
• BaderLab / scClustViz
  Explore and share your scRNAseq clustering results
  ☆46Updated last year
• BaderLab / AgingMouseBrainCCInx
  Predicted cell-cell interactions of the aging mouse brain
  ☆19Updated 4 years ago
• combiz / scFlow
  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
  ☆54Updated 6 months ago
• shenorrLabTRDF / cellAlign
  ☆36Updated 3 years ago
• bioFAM / slalom
  ☆28Updated last year
• jdime / scRNAseq_cell_cluster_labeling
  Scripts to run and benchmark scRNA-seq cell cluster labeling methods
  ☆47Updated 4 years ago
• ctlab / LinSeed
  Linseed: LINear Subspace identification for gene Expresion Deconvolution
  ☆28Updated 5 years ago
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆42Updated last year
• icbi-lab / immune_deconvolution_benchmark
  Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…
  ☆41Updated 4 years ago
• pachterlab / BHGP_2022
  ☆21Updated 2 years ago
• klarman-cell-observatory / scSVA
  Single-cell Scalable Visualization and Analytics
  ☆24Updated 5 years ago
• KenLauLab / dropkick
  Automated cell filtering for single-cell RNA sequencing data
  ☆24Updated 10 months ago
• MarioniLab / Deconvolution2016
  Code and manuscript files for Aaron and Karsten's deconvolution paper.
  ☆16Updated 5 years ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆40Updated 10 months ago
• lhe17 / nebula
  ☆28Updated 6 months ago
• MSingerLab / COMETSC
  COMET Single-Cell Marker Detection tool
  ☆31Updated 2 years ago
• randel / MIND
  Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
  ☆43Updated last year
• drighelli / awesome-spatial-omics
  ☆29Updated 3 years ago
• czi-hca-comp-tools / easy-data
  easy access to benchmark datasets
  ☆49Updated 6 years ago
• jessemzhang / tn_test
  post-clustering differential expression test
  ☆35Updated 5 years ago