Python version of DISCO toolkit
☆12Nov 21, 2024Updated last year
Alternatives and similar repositories for DISCOtoolkit_py
Users that are interested in DISCOtoolkit_py are comparing it to the libraries listed below
Sorting:
- ☆37Feb 16, 2026Updated 2 weeks ago
- ☆46Jun 16, 2025Updated 8 months ago
- A Stardew Valley mod called ChildToNPC.☆14Aug 29, 2020Updated 5 years ago
- ☆25Oct 25, 2023Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Oct 25, 2024Updated last year
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆11Dec 3, 2023Updated 2 years ago
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆42Nov 22, 2024Updated last year
- A CNN based model to predict the efficacy of Cas12a sgRNAs in diagnostic scenarios.☆12Feb 29, 2024Updated 2 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- A rapid and low-memory multiple-genome aligner for closely related genomes☆24Sep 3, 2025Updated 6 months ago
- Simulation and optimization of cell clusters.☆12Aug 25, 2025Updated 6 months ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated last year
- python codes for iDNA-ABF: multi-scale deep biological language learning model for the accurate and interpretable prediction of DNA methy…☆15May 6, 2024Updated last year
- deepBreaks , a computational method, aims to identify important changes in association with the phenotype of interest using multi-alignme…☆12Oct 22, 2025Updated 4 months ago
- SNp Exploration and Analysis using EPigenomics data☆11Jan 14, 2025Updated last year
- Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)☆11Feb 2, 2026Updated last month
- Optimizing weighted gene co-expression network analysis (WGCNA, an R package) with a multi-threaded calculation of the Topological Overla…☆12Jan 5, 2022Updated 4 years ago
- monae: multi-modal single-cell integration and imputation☆13Sep 13, 2024Updated last year
- Scanomatic☆11Oct 12, 2023Updated 2 years ago
- An efficient tool for large-scale correlation network analysis☆14Dec 27, 2024Updated last year
- Automated ingestion and conversion of various single-cell data formats, within and across species☆13Jan 26, 2026Updated last month
- ☆15Feb 20, 2025Updated last year
- Analaysis for the batch correction paper☆12Apr 26, 2025Updated 10 months ago
- 🔬 R package: Analysis of Large Affymetrix Microarray Data Sets☆12Dec 14, 2025Updated 2 months ago
- ☆14Apr 2, 2025Updated 11 months ago
- Identification of transposable element insertion polymorphisms (TIPs) based on a pan-genome and large-scale resequencing data☆15Mar 14, 2022Updated 3 years ago
- Interactive TooManyCells Trees☆14Dec 6, 2024Updated last year
- ☆16May 31, 2024Updated last year
- Codebase for the domain adaptation (cross-species TF binding prediction) project.☆12Aug 29, 2022Updated 3 years ago
- 📦{ohmyggplot}: An R package for better ggplot2 defaults.☆16Apr 2, 2024Updated last year
- A Spatial Transcriptomics Geospatial Profile Recovery System Tool through Anchors☆19Jul 24, 2025Updated 7 months ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆13Oct 17, 2024Updated last year
- TrendCatcher is an open source R-package that allows users to systematically analyze and visualize time course data. Please cite "Tempora…☆16May 20, 2025Updated 9 months ago
- ☆13Jan 29, 2021Updated 5 years ago
- ☆10Apr 10, 2016Updated 9 years ago
- Detect hierarchical structures in cell-cell communications☆16Jan 26, 2025Updated last year
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- Aligned Diffusion Schroedinger Bridges (UAI 2023)☆13Sep 18, 2025Updated 5 months ago