Alternatives and similar repositories for easyTCGA

Users that are interested in easyTCGA are comparing it to the libraries listed below

• xjsun1221 / tinyarray
  plots function for array
  ☆97Updated last year
• junjunlab / GseaVis
  An implement R package to visualize GSEA results
  ☆191Updated last month
• IOBR / IOBR
  IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.
  ☆257Updated 3 weeks ago
• tjhwangxiong / TCGAplot
  A number of functions were generated to perform pan-cancer DEG analysis, correlation analysis between gene expression and TMB, MSI, TIME,…
  ☆119Updated 7 months ago
• ixxmu / mp_duty
  抓取网络文章到github issues保存
  ☆173Updated this week
• Zaoqu-Liu / IRLS
  Machine learning-based integrative analysis develops an immune-derived lncRNA signature for improving clinical outcomes in colorectal can…
  ☆119Updated 5 months ago
• czbiohub-sf / scell_lung_adenocarcinoma
  This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset
  ☆151Updated 4 years ago
• JarningGau / ProjectSVR
  A package for reference mapping and nice visualization
  ☆22Updated last year
• wu-yc / scMetabolism
  Quantifying metabolism activity at the single-cell resolution
  ☆144Updated 4 months ago
• l-magnificence / Mime
  Machine learning-based integration model with elegant performance
  ☆163Updated last month
• Sijin-ZhangLab / PanMyeloid
  ☆108Updated 5 years ago
• tanlabcode / spatial-bonemarrow-atlas
  This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…
  ☆86Updated last year
• TangFei965 / pan-NK
  These are scripts for pan-cacner NK cells analyses.
  ☆72Updated 2 years ago
• chuiqin / irGSEA
  The integration of single cell rank-based gene set enrichment analysis
  ☆136Updated 3 months ago
• mengxu98 / scop
  An end-to-end Single-Cell Omics analysis Pipeline designed to facilitate comprehensive analysis and exploration of single-cell omics data…
  ☆72Updated this week
• sunduanchen / Scissor
  Scissor package
  ☆238Updated last year
• Yelab1994 / iMLGAM
  ☆93Updated 2 months ago
• jmzeng1314 / scRNA_10X
  ☆94Updated 6 years ago
• digitalcytometry / cytotrace2
  CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
  ☆175Updated this week
• hedyBao / HNSCC_scRNA
  ☆38Updated last year
• xlucpu / MOVICS
  Multi-Omics integration and VIsualization in Cancer Subtyping
  ☆145Updated 4 years ago
• jmzeng1314 / AnnoProbe
  ☆113Updated 2 years ago
• yuyang3 / pan-B
  These are scripts for pan-cacner B cells analyses.
  ☆54Updated last year
• WXlab-NJMU / scrna-recom
  collected resource for scRNA-seq analysis
  ☆67Updated 2 years ago
• Swarbricklab-code / BrCa_cell_atlas
  Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".
  ☆119Updated last year
• junjunlab / junjunlab
  ☆21Updated 2 weeks ago
• AweKevin / TIIClnc
  Machine learning-based identification of tumor-infiltrating immune cell-associated lncRNAs for improving outcomes and immunotherapy respo…
  ☆14Updated 3 years ago
• naomihabiblab / BEYOND_DLPFC
  Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease
  ☆61Updated 10 months ago
• Dragonlongzhilin / RenalTumor
  Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma
  ☆79Updated last year
• RegnerM2015 / scENDO_scOVAR_2020
  This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…
  ☆49Updated last year