Alternatives and similar repositories for easyTCGA:

Users that are interested in easyTCGA are comparing it to the libraries listed below

• Zaoqu-Liu / IRLS
  Machine learning-based integrative analysis develops an immune-derived lncRNA signature for improving clinical outcomes in colorectal can…
  ☆104Updated 2 years ago
• Yelab1994 / iMLGAM
  ☆90Updated 2 weeks ago
• l-magnificence / Mime
  Machine learning-based integration model with elegant performance
  ☆93Updated 5 months ago
• xjsun1221 / tinyarray
  plots function for array
  ☆91Updated 7 months ago
• JarningGau / ProjectSVR
  A package for reference mapping and nice visualization
  ☆19Updated 8 months ago
• IOBR / IOBR
  IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.
  ☆222Updated last week
• junjunlab / GseaVis
  An implement R package to visualize GSEA results
  ☆142Updated last week
• hedyBao / HNSCC_scRNA
  ☆27Updated 10 months ago
• TangFei965 / pan-NK
  These are scripts for pan-cacner NK cells analyses.
  ☆67Updated last year
• Sijin-ZhangLab / PanMyeloid
  ☆96Updated 4 years ago
• jmzeng1314 / scRNA_10X
  ☆92Updated 5 years ago
• tanlabcode / spatial-bonemarrow-atlas
  This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…
  ☆72Updated 3 months ago
• tjhwangxiong / TCGAplot
  A number of functions were generated to perform pan-cancer DEG analysis, correlation analysis between gene expression and TMB, MSI, TIME,…
  ☆88Updated 3 months ago
• czbiohub-sf / scell_lung_adenocarcinoma
  This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset
  ☆145Updated 4 years ago
• yuyang3 / pan-B
  These are scripts for pan-cacner B cells analyses.
  ☆45Updated 5 months ago
• jmzeng1314 / AnnoProbe
  ☆102Updated 2 years ago
• Starlitnightly / single_cell_tutorial
  单细胞分析的中文pipeline
  ☆180Updated 9 months ago
• wu-yc / scMetabolism
  Quantifying metabolism activity at the single-cell resolution
  ☆125Updated 5 months ago
• sunduanchen / Scissor
  Scissor package
  ☆201Updated 8 months ago
• chuiqin / irGSEA
  The integration of single cell rank-based gene set enrichment analysis
  ☆116Updated 5 months ago
• Swarbricklab-code / BrCa_cell_atlas
  Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".
  ☆110Updated 3 months ago
• JarningGau / GeneCooc
  ☆11Updated 2 weeks ago
• jmzeng1314 / methy_array
  ☆96Updated 4 years ago
• jmzeng1314 / TCGA_BRCA
  ☆45Updated 5 years ago
• WXlab-NJMU / scrna-recom
  collected resource for scRNA-seq analysis
  ☆57Updated last year
• digitalcytometry / cytotrace2
  CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
  ☆111Updated this week
• DaXuanGarden / DXMarkers
  ☆11Updated 9 months ago
• Starlitnightly / bioinformatic_tutorial
  生物信息学相关的教程
  ☆41Updated last year
• Dragonlongzhilin / RenalTumor
  Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma
  ☆76Updated 2 months ago
• genecell / single-cell-papers-with-code
  Papers with code for single cell related papers
  ☆276Updated last year