Alternatives and similar repositories for arete:

Users that are interested in arete are comparing it to the libraries listed below

• tseemann / scripts
  Miscellaneous Perl scripts from 20 years in microbial bioinformatics
  ☆17Updated 9 months ago
• xinehc / melon
  Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
  ☆34Updated this week
• AlexanderLabWHOI / EUKulele
  Automatic eukaryotic taxonomic classification
  ☆28Updated last month
• ablab / plasmidVerify
  plasmidVerify: plasmid contig verification tool
  ☆13Updated 4 years ago
• zjshi / Maast
  Microbial agile accurate SNP Typer
  ☆29Updated last year
• MrTomRod / scoary-2
  Calculate assocations between genes and traits
  ☆23Updated last month
• gtonkinhill / tracs
  Fast pairwise transmission inference from single genome and/or metagenomic data
  ☆21Updated 6 months ago
• hoelzer-lab / ribap
  A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs
  ☆27Updated 6 months ago
• lmlui / Jorg
  MAG Circularization Method
  ☆33Updated 2 years ago
• apcamargo / magpurify2
  Identify and remove contaminants from metagenome-assembled genomes
  ☆18Updated last year
• valflanza / accnet
  ☆13Updated 7 years ago
• wtmatlock / flanker
  Gene-flank analysis tool
  ☆27Updated 4 months ago
• mtisza1 / Cenote-Taker3
  Discover and annotate the virome
  ☆41Updated last week
• OLC-Bioinformatics / ConFindr
  Intra-species bacterial contamination detection
  ☆25Updated 2 months ago
• gatech-genemark / MetaGeneMark-2
  MetaGeneMark-2: Improved Gene Prediction in Metagenomes
  ☆21Updated last year
• KatyBrown / plot_phylo
  Python package to plot a phylogenetic tree on an existing matplotlib axis.
  ☆16Updated last month
• bacpop / CELEBRIMBOR
  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
  ☆23Updated 9 months ago
• Gibbons-Lab / medi
  Metagenomic Estimation of Dietary Intake and Content.
  ☆28Updated last week
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆34Updated 3 years ago
• maxlcummins / pipelord
  A microbial genomic analysis pipeline used by the Djordjevic Lab
  ☆12Updated 2 months ago
• AnantharamanLab / PropagAtE
  Prophage Activity Estimator
  ☆26Updated 10 months ago
• metagenopolis / CroCoDeEL
  CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data
  ☆24Updated this week
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆40Updated last week
• rrwick / Core-SNP-filter
  a tool to filter sites in a FASTA-format whole-genome pseudo-alignment
  ☆59Updated last month
• insapathogenomics / ReporTree
  A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data
  ☆32Updated 4 months ago
• HIT-ImmunologyLab / DBSCAN-SWA
  ☆31Updated last year
• FredHutch / gig-map
  Build a map of genes present across a set of microbial genomes
  ☆14Updated this week
• wandreopoulos / deeplasmid
  ☆20Updated 7 months ago
• Alan-Collins / CRISPR_comparison_toolkit
  Tools to analyze the differences and similarities between CRISPR arrays
  ☆10Updated 4 months ago
• ikmb / MAGScoT
  MAGScoT - a MAG scoring and refinement tool
  ☆34Updated 6 months ago