Alternatives and similar repositories for tabula-muris-senis:

Users that are interested in tabula-muris-senis are comparing it to the libraries listed below

• colomemaria / epiScanpy
  Episcanpy: Epigenomics Single Cell Analysis in Python
  ☆141Updated last month
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆155Updated last year
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆141Updated 10 months ago
• GregorySchwartz / too-many-cells
  Cluster single cells and analyze cell clade relationships with colorful visualizations.
  ☆105Updated 2 months ago
• KrishnaswamyLab / SingleCellWorkshop
  ☆91Updated 3 years ago
• CahanLab / singleCellNet
  SingleCellNet: classify single cells across species and platforms
  ☆134Updated last year
• theislab / scib-pipeline
  Snakemake pipeline that works with the scIB package to benchmark data integration methods.
  ☆67Updated last year
• LewisLabUCSD / Ligand-Receptor-Pairs
  Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.
  ☆124Updated last year
• swolock / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆138Updated 4 years ago
• zktuong / dandelion
  dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data
  ☆113Updated this week
• ncborcherding / utility
  Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
  ☆83Updated 6 months ago
• changwn / scFEA
  single cell Flux Estimation Analysis (scFEA) Try the below web server!
  ☆109Updated last year
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆153Updated 6 months ago
• Teichlab / bbknn
  Batch balanced KNN
  ☆152Updated last year
• interactivereport / cellxgene_VIP
  Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…
  ☆137Updated 6 months ago
• LocasaleLab / Single-Cell-Metabolic-Landscape
  Pipeline for exploring metebolic heterogeneity at single-cell resolution
  ☆73Updated 4 years ago
• rajewsky-lab / novosparc
  ☆126Updated last year
• quadbio / Pando
  Multiome GRN inference.
  ☆115Updated 8 months ago
• zhangzlab / covid_balf
  R script for the covid balf data analysis
  ☆65Updated 4 years ago
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆108Updated 4 months ago
• aertslab / SCENICprotocol
  A scalable SCENIC workflow for single-cell gene regulatory network analysis
  ☆149Updated 2 years ago
• SCCAF / sccaf
  Single-Cell Clustering Assessment Framework
  ☆96Updated last year
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆95Updated this week
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆118Updated 2 months ago
• swaruplab / Single-nuclei-epigenomic-and-transcriptomic-landscape-in-Alzheimer-disease
  Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease
  ☆89Updated 3 years ago
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆133Updated this week
• JEFworks-Lab / STdeconvolve
  Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data
  ☆120Updated 2 months ago
• phbradley / conga
  Clonotype Neighbor Graph Analysis
  ☆83Updated 4 months ago
• theislab / sfaira
  data and model repository for single-cell data
  ☆135Updated last year
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆121Updated last year