czbiohub-sf / tabula-muris-senis
Tabula Muris Senis
☆102Updated last year
Alternatives and similar repositories for tabula-muris-senis
Users that are interested in tabula-muris-senis are comparing it to the libraries listed below
Sorting:
- R package to access DoRothEA's regulons☆147Updated last year
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆113Updated this week
- Episcanpy: Epigenomics Single Cell Analysis in Python☆144Updated 5 months ago
- ☆90Updated 4 years ago
- Clonotype Neighbor Graph Analysis☆89Updated last month
- SingleCellNet: classify single cells across species and platforms☆137Updated last year
- Python package to perform enrichment analysis from omics data.☆194Updated this week
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆106Updated 3 months ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 10 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆71Updated 3 months ago
- Spatial transcriptomics of heart tissue☆85Updated last year
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆111Updated 6 months ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆68Updated 3 months ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆59Updated last year
- A Shiny web app for mapping datasets using Seurat v4☆127Updated 6 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆158Updated last month
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆131Updated 6 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆130Updated 2 years ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆121Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆105Updated 2 years ago
- Single-Cell Clustering Assessment Framework☆101Updated last year
- Publication Page for MPAL Paper 2019☆82Updated 4 years ago
- A Bayesian model for compositional single-cell data analysis☆163Updated 2 years ago
- Multiome GRN inference.☆121Updated last year
- Direct estimation of mean and covariance from single cell RNA seq experiments☆107Updated last week
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- Single-cell disease relevance score (scDRS)☆127Updated 7 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆68Updated last month
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆157Updated 2 years ago