czbiohub-sf / tabula-muris-senis
Tabula Muris Senis
☆100Updated last year
Alternatives and similar repositories for tabula-muris-senis:
Users that are interested in tabula-muris-senis are comparing it to the libraries listed below
- R package to access DoRothEA's regulons☆144Updated last year
- Episcanpy: Epigenomics Single Cell Analysis in Python☆144Updated 4 months ago
- Multiome GRN inference.☆120Updated last year
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆112Updated this week
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆129Updated 2 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆104Updated 2 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 9 months ago
- Python package to perform enrichment analysis from omics data.☆192Updated this week
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆110Updated 5 months ago
- Single-cell disease relevance score (scDRS)☆127Updated 6 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆71Updated 3 months ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆131Updated 5 months ago
- Single-Cell Clustering Assessment Framework☆101Updated last year
- SingleCellNet: classify single cells across species and platforms☆137Updated last year
- Gene set scoring for single-cell data☆148Updated this week
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆119Updated last year
- Python implementation of Milo for differential abundance testing on KNN graph☆67Updated 2 months ago
- A Bayesian model for compositional single-cell data analysis☆162Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆143Updated 3 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆158Updated 3 weeks ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆165Updated 10 months ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆106Updated 3 months ago
- Clonotype Neighbor Graph Analysis☆88Updated last month
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆162Updated last year
- A docker image for single-cell analysis☆85Updated 2 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆103Updated 2 months ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- ☆90Updated 4 years ago
- scDIOR: Single cell data IO softwaRe☆139Updated 3 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆109Updated this week