czbiohub-sf / tabula-muris-senisLinks
Tabula Muris Senis
☆103Updated 2 years ago
Alternatives and similar repositories for tabula-muris-senis
Users that are interested in tabula-muris-senis are comparing it to the libraries listed below
Sorting:
- R package to access DoRothEA's regulons☆149Updated last year
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆74Updated 5 months ago
- ☆91Updated 4 years ago
- Single-Cell Clustering Assessment Framework☆103Updated last year
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆114Updated 8 months ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆150Updated this week
- Episcanpy: Epigenomics Single Cell Analysis in Python☆144Updated 7 months ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆89Updated last year
- ☆131Updated last year
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆135Updated last month
- SingleCellNet: classify single cells across species and platforms☆137Updated last year
- trajectory inference☆104Updated 5 months ago
- Convert between AnnData and SingleCellExperiment☆137Updated last week
- Automated, probabilistic assignment of cell types in scRNA-seq data☆202Updated 2 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆117Updated this week
- R package for Pathway RespOnsive GENe activity inference☆107Updated 2 years ago
- A docker image for single-cell analysis☆88Updated 5 months ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆109Updated 5 months ago
- A Bayesian model for compositional single-cell data analysis☆169Updated 2 years ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆124Updated last year
- Multiome GRN inference.☆124Updated last year
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆99Updated 4 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆120Updated last week
- Direct estimation of mean and covariance from single cell RNA seq experiments☆111Updated 2 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆133Updated 2 years ago
- Spatial transcriptomics of heart tissue☆88Updated last year
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆105Updated 2 years ago
- Clonotype Neighbor Graph Analysis☆89Updated last week
- Tools for single-cell data processing☆125Updated last year