czbiohub-sf / tabula-muris-senis
Tabula Muris Senis
☆100Updated last year
Alternatives and similar repositories for tabula-muris-senis:
Users that are interested in tabula-muris-senis are comparing it to the libraries listed below
- A Bayesian model for compositional single-cell data analysis☆155Updated last year
- Detect doublets in single-cell RNA-seq data☆139Updated 4 years ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆141Updated 2 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆112Updated this week
- ☆91Updated 4 years ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆127Updated 2 years ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆96Updated last week
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆106Updated 3 months ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆140Updated this week
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆113Updated last year
- R package to access DoRothEA's regulons☆142Updated 11 months ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated last year
- marker-based purification of cell types from single-cell RNA-seq datasets☆102Updated last week
- Multiome GRN inference.☆115Updated 9 months ago
- software to detect doublets☆88Updated last month
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆68Updated 3 weeks ago
- Single-cell disease relevance score (scDRS)☆119Updated 3 months ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆149Updated 2 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆154Updated 7 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆138Updated last month
- Single-Cell Clustering Assessment Framework☆98Updated last year
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆87Updated 5 years ago
- LIANA+: an all-in-one framework for cell-cell communication☆183Updated this week
- SingleCellNet: classify single cells across species and platforms☆135Updated last year
- Significance analysis for clustering single-cell RNA-sequencing data☆110Updated 5 months ago
- Clonotype Neighbor Graph Analysis☆83Updated 5 months ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆121Updated 3 months ago
- Convert between AnnData and SingleCellExperiment☆131Updated this week
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆83Updated 7 months ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆105Updated 3 weeks ago