czbiohub-sf / tabula-muris-senisLinks
Tabula Muris Senis
☆107Updated 2 years ago
Alternatives and similar repositories for tabula-muris-senis
Users that are interested in tabula-muris-senis are comparing it to the libraries listed below
Sorting:
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆80Updated 10 months ago
- R package to access DoRothEA's regulons☆152Updated last year
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆160Updated last month
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆146Updated 2 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆115Updated last year
- ☆96Updated 4 years ago
- data and model repository for single-cell data☆136Updated last year
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆150Updated 4 months ago
- Clonotype Neighbor Graph Analysis☆93Updated 3 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆121Updated this week
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆149Updated last year
- SingleCellNet: classify single cells across species and platforms☆139Updated 2 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆171Updated 8 months ago
- Spatial transcriptomics of heart tissue☆103Updated 2 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- A Bayesian model for compositional single-cell data analysis☆184Updated 2 years ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆138Updated 2 years ago
- A docker image for single-cell analysis☆101Updated last month
- Convert between AnnData and SingleCellExperiment☆142Updated last week
- Scanpy use cases.☆87Updated 5 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆93Updated this week
- software to detect doublets☆95Updated 11 months ago
- trajectory inference☆105Updated 10 months ago
- ☆131Updated 2 years ago
- Batch balanced KNN☆176Updated 2 years ago
- Multiome GRN inference.☆131Updated last year
- R package for Pathway RespOnsive GENe activity inference☆111Updated 2 years ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆117Updated last month
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆217Updated last year