niaid / python_biologistLinks
Python Programming for Biologists
☆11Updated last week
Alternatives and similar repositories for python_biologist
Users that are interested in python_biologist are comparing it to the libraries listed below
Sorting:
- ☆10Updated 13 years ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated 2 years ago
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆22Updated 9 years ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆24Updated 3 months ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Updated last year
- CADD-SV – a framework to score the effect of structural variants☆15Updated 6 months ago
- Master of Pores 2☆23Updated 9 months ago
- Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…☆26Updated 5 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25Updated 2 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆24Updated last year
- cgat-apps repository☆34Updated 5 months ago
- Copy Number Methods for Detection and Genome Wide Association Tests☆22Updated 10 months ago
- Influenza genome analysis Nextflow workflow☆22Updated last week
- ☆27Updated 7 months ago
- PiGx SARS-CoV-2 wastewater sequencing pipeline☆18Updated 2 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 5 months ago
- ☆32Updated 4 years ago
- Portable WDL workflows for IDseq production pipelines☆32Updated 3 years ago
- Lecture on viral phylodynamics☆12Updated 3 years ago
- A pipeline creation tool using Snakemake☆11Updated last week
- ☆11Updated 2 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- Suite of command-line software for high-performance graphical analysis of ChIP-seq/RNA-seq/ATAC-seq data☆19Updated 3 years ago
- Virus metagenomic pipeline for unknown host or in absence of a host genome☆18Updated 6 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- 🍶 Genome assembly with short sequence reads☆25Updated last year
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago