Python Programming for Biologists
☆12Dec 3, 2025Updated 2 months ago
Alternatives and similar repositories for python_biologist
Users that are interested in python_biologist are comparing it to the libraries listed below
Sorting:
- genetic distance plotting for recombination events analysis☆10Nov 21, 2024Updated last year
- ☆10Aug 29, 2012Updated 13 years ago
- Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.☆13Feb 19, 2026Updated last week
- Tutorials for data science and bioinformatics☆13May 3, 2024Updated last year
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Dec 2, 2024Updated last year
- A method to improve mappings on circular genomes, using the BWA mapper☆10Mar 4, 2022Updated 3 years ago
- Info about NIH-IRP Single Cell Users Group events☆12Nov 21, 2023Updated 2 years ago
- Simplified Python SDK for interacting with the Waters Empower Web API☆22Jan 5, 2026Updated last month
- Welcome to the StrainHub Repo - Files and Data - StrainHub Online:☆17Jun 26, 2022Updated 3 years ago
- Bioinformatics with Unix, bash, Make, Python, and parallel☆22Aug 17, 2020Updated 5 years ago
- ☆40Sep 14, 2016Updated 9 years ago
- Basestack is a platform for rapid and real time analysis of NGS data. It provides a executable application that connects standard bionfor…☆27Jan 7, 2025Updated last year
- R vignettes/pkgdown for elementary statistics for a summer course☆14Jan 9, 2025Updated last year
- ☆27Feb 20, 2026Updated last week
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Dec 2, 2024Updated last year
- Visualise interstrain recombination from environmental samples.☆26Apr 18, 2019Updated 6 years ago
- ☆10May 14, 2025Updated 9 months ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆34Feb 2, 2026Updated 3 weeks ago
- Original materials for the "Introduction to Solving Biological Problems with Python" 2 days course☆10Jun 25, 2018Updated 7 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Feb 20, 2021Updated 5 years ago
- Add biological annotations to variants in a given VCF file.☆32Sep 13, 2021Updated 4 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Aug 4, 2024Updated last year
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Dec 10, 2024Updated last year
- Surveillance of pathogens using population genomics and sequencing☆57Feb 13, 2026Updated 2 weeks ago
- Standardized and Automated MetaBarcoding Analyses workflow (Mirror)☆13Jun 28, 2023Updated 2 years ago
- ☆10Jan 20, 2022Updated 4 years ago
- Programming for Biology 2019☆41Oct 3, 2022Updated 3 years ago
- Automated pipeline for amplicon sequence analysis☆11Nov 25, 2025Updated 3 months ago
- Week 3 of the OSU CoMS Webinar: Introduction to Amplicon Sequencing (QIIME, DADA2, mothur) and Ecological Statistics☆10May 28, 2023Updated 2 years ago
- Learning the basics of reading and writing files in Python.☆10Mar 16, 2021Updated 4 years ago
- Variant Interpretation Pipeline☆47Feb 20, 2026Updated last week
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆49Jan 27, 2026Updated last month
- Detection of viruses from RNA-Seq on human samples☆46Mar 18, 2023Updated 2 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Feb 17, 2023Updated 3 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Feb 9, 2026Updated 2 weeks ago
- Browser-based tool for visualizing and analyzing germline copy number variants in genomic data☆10Nov 7, 2024Updated last year
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆10Jan 6, 2023Updated 3 years ago
- VETA - A simple tool do evaluate variant predictors☆11Jun 17, 2024Updated last year
- Material for a workshop on reproducible science with R and RStudio☆14May 22, 2022Updated 3 years ago