Alternatives and similar repositories for python_biologist:

Users that are interested in python_biologist are comparing it to the libraries listed below

• lotharwissler / bioinformatics
  ☆10Updated 12 years ago
• crazyhottommy / pyflow-RNAseq
  RNAseq pipeline based on snakemake
  ☆22Updated last year
• wassermanlab / Variant_catalogue_pipeline
  Variant catalogue pipeline
  ☆25Updated this week
• molgenis / capice
  ☆23Updated last month
• ICBI / viGEN
  viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
  ☆27Updated 3 months ago
• stevekm / Bioinformatics
  Bioinformatics analysis scripts, workflows, general code examples
  ☆53Updated 3 years ago
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆30Updated 2 years ago
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated this week
• oicr-gsi / debarcer
  Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes
  ☆15Updated 3 years ago
• stephenfloor / extract-transcript-regions
  For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…
  ☆34Updated last year
• epigen / open_pipelines
  Pipelines for NGS data preprocessing by the Bock lab and friends
  ☆20Updated 2 years ago
• chizksh / digenome-toolkit2
  Digenome-toolkit ver2.
  ☆16Updated 3 years ago
• chanzuckerberg / idseq-workflows
  Portable WDL workflows for IDseq production pipelines
  ☆31Updated 3 years ago
• genepi / haplocheck
  Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies
  ☆18Updated last year
• JD2112 / methylr
  methylR: a single shiny solution from sequencer data to pathway analysis
  ☆11Updated 3 months ago
• nf-core / dualrnaseq
  Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.
  ☆20Updated this week
• IARCbioinfo / alignment-nf
  Whole Exome/Whole Genome Sequencing alignment pipeline
  ☆28Updated 4 months ago
• gzhmat / ShinyCNV
  a Shiny/R application to view and annotate copy number variations
  ☆28Updated last year
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆39Updated 2 years ago
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated last year
• s-andrews / sradownloader
  A script to make downloading of SRA/GEO data easier
  ☆31Updated last year
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated last month
• tobiasrausch / vc
  A tutorial on structural variant calling for short read sequencing data
  ☆26Updated 3 months ago
• cortes-ciriano-lab / ReConPlot
  ☆21Updated last month
• costasilvati / consexpression
  Tool for RNA-Seq analysis.
  ☆38Updated 2 years ago
• biocorecrg / MOP2
  Master of Pores 2
  ☆23Updated last month
• stephenturner / mergelanes
  Merge fastq files split over lanes
  ☆20Updated 6 years ago
• cibiobcg / EthSEQ
  Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data
  ☆15Updated last year
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆21Updated 5 years ago
• TrinityCTAT / CTAT-VirusIntegrationFinder
  ☆15Updated last year