niaid / python_biologistLinks
Python Programming for Biologists
☆11Updated last month
Alternatives and similar repositories for python_biologist
Users that are interested in python_biologist are comparing it to the libraries listed below
Sorting:
- ☆10Updated 13 years ago
- PERF is an Exhaustive Repeat Finder☆34Updated 4 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated last year
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated 2 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated 2 years ago
- (WIP) best-practices workflow for rare disease☆62Updated last year
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…☆26Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 4 years ago
- Genomic VCF to tab-separated values☆47Updated 2 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆25Updated last year
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 2 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated this week
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 10 months ago