brentp / poverlapLinks
significance testing over interval overlaps
☆30Updated 5 years ago
Alternatives and similar repositories for poverlap
Users that are interested in poverlap are comparing it to the libraries listed below
Sorting:
- BigWig manpulation tools using libBigWig and htslib☆29Updated 11 months ago
- ☆12Updated last month
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- ☆21Updated 3 months ago
- v2.x of the microassembly based somatic variant caller☆24Updated last month
- ☆11Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 5 months ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- ☆37Updated 4 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Location of public benchmarking; primarily final results☆18Updated 5 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 4 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated last month
- sort genomic data☆35Updated 5 years ago
- (WIP) best-practices workflow for rare disease☆60Updated last year