brentp / poverlapLinks
significance testing over interval overlaps
☆30Updated 5 years ago
Alternatives and similar repositories for poverlap
Users that are interested in poverlap are comparing it to the libraries listed below
Sorting:
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- create a gemini-compatible database from a VCF☆55Updated 4 years ago
- ☆14Updated 3 months ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- ☆36Updated 5 years ago
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- ☆23Updated last week
- (WIP) best-practices workflow for rare disease☆62Updated last year
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- ☆11Updated 7 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated last week
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 6 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated last year
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 2 weeks ago
- Haplotype-based somatic genome simulator☆10Updated 8 years ago