dportik / Pandas-for-Population-Structure-Barplots
A jupyter notebook tutorial for making high-quality barplot figures from population structure analyses (Admixture, Structure) with Python & Pandas.
☆13Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for Pandas-for-Population-Structure-Barplots
- spruceup☆21Updated 3 months ago
- Sorting and subsampling phylogenomic datasets☆20Updated 9 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆30Updated 2 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 2 years ago
- ☆21Updated 10 years ago
- ☆32Updated 3 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 3 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆44Updated 5 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆32Updated last year
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆21Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆36Updated last year
- scripts to parse and analyse MCScanX collinearity output☆29Updated 4 years ago
- ☆16Updated 3 years ago
- Inferring global and local strict molecular clocks using root-to-tip regression☆11Updated 4 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated 3 weeks ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆47Updated 3 months ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆30Updated 8 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last week
- R package for comparison of synteny conservation at the genome-wide scale.☆13Updated 5 months ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆15Updated 7 years ago
- Tools and Utilities for msmc and msmc2☆46Updated last year
- Chromosome-level synteny plotting using orthologous regions☆28Updated 2 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆64Updated last month
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆34Updated last year
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 4 years ago
- Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis☆11Updated last year
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆38Updated this week
- Population genetics analyses from NGS data☆25Updated 3 years ago
- Improved Phased Assembler☆28Updated 2 years ago