dportik / Pandas-for-Population-Structure-BarplotsLinks
A jupyter notebook tutorial for making high-quality barplot figures from population structure analyses (Admixture, Structure) with Python & Pandas.
☆14Updated last month
Alternatives and similar repositories for Pandas-for-Population-Structure-Barplots
Users that are interested in Pandas-for-Population-Structure-Barplots are comparing it to the libraries listed below
Sorting:
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆31Updated 3 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Ancient microbiome snakemake workflow☆24Updated last month
- ☆32Updated 4 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 9 years ago
- ☆26Updated 4 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 6 months ago
- scripts to parse and analyse MCScanX collinearity output☆31Updated 5 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆49Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆37Updated last month
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- Multi-genome synteny block visualization tool☆41Updated 4 months ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆10Updated 10 years ago
- spruceup☆24Updated 9 months ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆40Updated 4 months ago
- Automated de novo assembly of whole chloroplast genomes.☆45Updated 8 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated last month
- Toolkit for preparing genomes for submission to NCBI☆29Updated 3 years ago
- Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot☆11Updated last year
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆37Updated last year
- Workshop on Genomics - Genomics Adventure☆41Updated 4 months ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆15Updated 7 years ago