Code for Russell et al. "A large-scale analysis of bioinformatics code on GitHub"
☆34Apr 29, 2019Updated 6 years ago
Alternatives and similar repositories for github-bioinformatics
Users that are interested in github-bioinformatics are comparing it to the libraries listed below
Sorting:
- IPAW: a Nextflow workflow for proteogenomics☆29Aug 8, 2024Updated last year
- BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium☆11Jan 7, 2024Updated 2 years ago
- A copy of the source for Grinstead and Snell's lovely probability book☆14Dec 20, 2015Updated 10 years ago
- R interface to megadepth: BigWig and BAM related utilities☆13Dec 12, 2024Updated last year
- A software package for detection of copy number alterations from tumor samples☆12May 8, 2015Updated 10 years ago
- ☆17May 5, 2020Updated 5 years ago
- Biomedical Relation Extraction for Transcription Factor and Gene / Gene Products (part of a Master Thesis at Rostlab, TUM)☆12Dec 23, 2017Updated 8 years ago
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 2 months ago
- Shiny proxy server Docker image which spins up dockerized Shiny apps in a Flexdashboard HTML wrapper☆13Apr 11, 2020Updated 5 years ago
- Differential ATAC-seq toolkit☆28Dec 21, 2023Updated 2 years ago
- Repository with all my container recipes 👩🍳☆17Sep 9, 2024Updated last year
- Robust and scalable inference of cell lineages via consensus clustering. Features novel algorithms for the comparison of weighted graphs …☆14Jan 16, 2017Updated 9 years ago
- Simulation tool for ChIP- and other -seq experiments☆14Mar 13, 2023Updated 2 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Helper functions for working with inForm data.☆20May 3, 2022Updated 3 years ago
- SigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be use…☆21Feb 10, 2026Updated 3 weeks ago
- DNA kmer operations for nim☆14Apr 24, 2022Updated 3 years ago
- ☆18Oct 22, 2024Updated last year
- RNA mapping pipeline☆18Jun 3, 2018Updated 7 years ago
- ☆20Oct 26, 2023Updated 2 years ago
- High-level R bindings for the DuckDB Database Management System☆18Aug 3, 2022Updated 3 years ago
- ☆21Aug 30, 2018Updated 7 years ago
- evaluating vcf parsing libraries☆19Mar 1, 2022Updated 4 years ago
- R/Medicine Working Group☆18Mar 17, 2023Updated 2 years ago
- iS-CellR: interactive graphical tool for analysis of single-cell RNAseq data☆24Oct 9, 2019Updated 6 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Sep 5, 2022Updated 3 years ago
- Multi-Enrichment Analysis of Gene Set Enrichment Analysis Results☆26Updated this week
- The dataset contains the three-phase current signals measured from a squirrel-cage induction motor. The experimental tests were carried o…☆12Jul 21, 2025Updated 7 months ago
- ⛄️🎄🖥 A Holiday Theme for RStudio☆22Nov 1, 2021Updated 4 years ago
- Display news and update outdated github R packages☆24Jul 12, 2021Updated 4 years ago
- ChIP-seq pipeline tool for quality check, normalization, statistical analysis, and visualization of multiple ChIP-seq samples.☆24Sep 27, 2025Updated 5 months ago
- My bioinfo toolbox☆50Feb 6, 2025Updated last year
- A bioinformatics tool for SV detection and virus integration discovery☆21Sep 12, 2017Updated 8 years ago
- ☆28Jan 25, 2022Updated 4 years ago
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆146Feb 17, 2026Updated 2 weeks ago
- a Shiny/R application to view and annotate copy number variations☆28Mar 8, 2023Updated 2 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Jan 6, 2021Updated 5 years ago
- Analysis and Visualization of Ribosome Profiling Data☆31Aug 29, 2025Updated 6 months ago
- LoFreq Version 3☆27Feb 25, 2021Updated 5 years ago