MCorentin / vargenLinks
VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a list of tissues / gwas traits of interest to complete the results. You can also use your own customised list of genes. VarGen is capable of annotating the variants to help you identify the most impactful ones…
☆17Updated last year
Alternatives and similar repositories for vargen
Users that are interested in vargen are comparing it to the libraries listed below
Sorting:
- Create LocusZoom-style plots in R.☆22Updated 2 years ago
- Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)☆33Updated 7 months ago
- R package to perform Bayesian Genome-Wide Association Studies☆41Updated 2 years ago
- HOT regions paper☆11Updated 6 years ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 8 years ago
- a set of NGS pipelines☆24Updated last week
- Query the gene models of a given organism/assembly☆27Updated 2 months ago
- workshop website on readthedocs☆21Updated 3 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- R package wrapping bedtools☆44Updated 10 months ago
- A small R package to make sequencing read coverage plots in R.☆40Updated 2 weeks ago
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Updated 5 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆14Updated last year
- Primo☆16Updated 4 years ago
- DriverPower☆26Updated last year
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆39Updated 3 months ago
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- Scripts for running a sibling GWAS☆16Updated 3 years ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Updated 3 years ago
- A Toolset for Chromosome X-Wide Association Studies☆12Updated 7 years ago
- Flexible Bayesian inference of mutational signatures☆38Updated 2 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆23Updated 2 years ago
- An interactive graphical illustration of genetic associations and their biological context☆17Updated last year
- ☆18Updated 8 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- Make rapid visualizations of RNA-seq data in R☆19Updated 3 months ago
- ☆29Updated 2 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- An R for fast and flexible DNA methylation analysis☆35Updated last month