MCorentin / vargenLinks
VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a list of tissues / gwas traits of interest to complete the results. You can also use your own customised list of genes. VarGen is capable of annotating the variants to help you identify the most impactful ones…
☆17Updated last year
Alternatives and similar repositories for vargen
Users that are interested in vargen are comparing it to the libraries listed below
Sorting:
- Create LocusZoom-style plots in R.☆22Updated 2 years ago
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆39Updated 3 weeks ago
- Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)☆32Updated 4 months ago
- 📊 An R package of RNA-seq workflow☆15Updated 3 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆14Updated last year
- R package wrapping bedtools☆44Updated 7 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 2 weeks ago
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆50Updated 7 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 8 years ago
- a set of NGS pipelines☆24Updated last week
- A Toolset for Chromosome X-Wide Association Studies☆12Updated 7 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 9 years ago
- Query the gene models of a given organism/assembly☆27Updated this week
- DriverPower☆26Updated 9 months ago
- HOT regions paper☆11Updated 6 years ago
- ☆29Updated last year
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆16Updated 5 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- Utility functions for FACETS☆39Updated this week
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Updated 3 years ago
- An interactive graphical illustration of genetic associations and their biological context☆17Updated last year
- Get SNP proxies from the 1000 Genomes Project.☆30Updated 7 years ago
- Primo☆16Updated 4 years ago
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆20Updated 2 months ago
- An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot☆28Updated 3 years ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆28Updated 2 years ago