Illumina / isaac2
Aligner for sequencing data
☆21Updated 8 years ago
Related projects ⓘ
Alternatives and complementary repositories for isaac2
- A tool to benchmark mappers and different parameters within minutes☆43Updated 5 years ago
- UCSC Nanopore☆43Updated 5 years ago
- An awk-like VCF parser☆54Updated 10 months ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- Utilities to create and analyze gVCF files☆39Updated 7 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆54Updated 7 years ago
- SV detection from paired end reads mapping☆38Updated 14 years ago
- 10x Genomics Reads Simulator☆45Updated 10 months ago
- Structural Variant Index☆70Updated this week
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆32Updated 7 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 5 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 5 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆43Updated 2 years ago
- Scripts for implementing read until and other examples.☆31Updated 4 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 3 years ago
- Read visualizer for structural variants☆81Updated 6 years ago
- lobSTR: a short tandem repeat profiler for next generation sequencing data☆50Updated last year
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 4 years ago
- ☆36Updated 6 months ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- Collection of notes and scripts related to NGS☆14Updated 5 months ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆30Updated 2 weeks ago