cancervariants / metakbLinks
Central repository for the VICC metakb web application
☆15Updated last week
Alternatives and similar repositories for metakb
Users that are interested in metakb are comparing it to the libraries listed below
Sorting:
- Associations of genomic features, drugs and diseases☆48Updated 2 years ago
- 3D hotspot mutation proximity analysis tool☆49Updated 2 years ago
- A phenotype-based tool for variant prioritization in WES and WGS data☆38Updated 2 years ago
- Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis☆23Updated last week
- A Python package for gene network analysis☆32Updated 3 years ago
- ☆21Updated last week
- Clinical interpretation of somatic mutations in cancer☆49Updated 8 months ago
- Platform for Oncogenomic Reporting and Interpretation (PORI)☆35Updated last month
- Python API for Xena Hub☆53Updated 2 years ago
- This repository contains Jupyter Notebooks containing GATK Best Practices Workflows☆26Updated 5 years ago
- Detect somatic variants from tumor and normal WGS/WXS data☆19Updated 3 weeks ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated 2 years ago
- BaseSpace Python SDK☆37Updated 3 years ago
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆41Updated 5 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Updated 2 years ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 3 months ago
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines☆86Updated last month
- Python biomart API☆69Updated 2 years ago
- ☆45Updated last week
- A simple pythonic interface to biomart.☆56Updated 5 years ago
- Dockstore implementation of CGP core WGS analysis☆30Updated 5 years ago
- Project Manager for NGS data analysis☆30Updated last month
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- Creates a target specific exome_full192.coverage.txt file required by MutSig☆21Updated 4 years ago
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆70Updated 3 weeks ago
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆18Updated 5 years ago
- Predict mutated T-cell epitopes from sequencing data☆30Updated 8 months ago
- Functional Associations using Variational Autoencoders☆40Updated last month