gagneurlab / RNAseq-ASHG
RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows
☆17Updated 2 years ago
Related projects: ⓘ
- A small R package to make sequencing read coverage plots in R.☆35Updated 2 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆23Updated 6 months ago
- methylR: a single shiny solution from sequencer data to pathway analysis☆9Updated last month
- Differential expression and allelic analysis, nonparametric statistics☆27Updated last year
- 📊 An R package of RNA-seq workflow☆15Updated 2 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆35Updated this week
- Make rapid visualizations of RNA-seq data in R☆18Updated 5 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 6 years ago
- ☆28Updated 2 months ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- Filter and prioritize fusion calls☆20Updated last month
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆15Updated 5 years ago
- ☆12Updated 6 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 8 years ago
- Lollipop-diagram to interactively visualize genetic mutations☆30Updated last week
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆32Updated 6 years ago
- A tidy interface for coverage analysis☆24Updated 4 years ago
- Evolutionary frequency visualization tool of temporal data☆21Updated 2 years ago
- ☆27Updated last year
- Tutorial to reproduce the analysis of Peixoto et al. (2015)☆10Updated 8 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated 10 months ago
- Isoform-level functional RNA-Seq analysis☆20Updated 2 months ago
- interactive plots for differential expression analysis☆25Updated 2 weeks ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.☆14Updated 10 years ago
- Read HOMER motif analysis output in R.☆15Updated 6 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆25Updated 3 years ago
- Interactive eQTL visualizations☆13Updated last year