swansonk14 / language_models_biologyLinks
☆18Updated last year
Alternatives and similar repositories for language_models_biology
Users that are interested in language_models_biology are comparing it to the libraries listed below
Sorting:
- Functional Embedding of Gene Signatures☆46Updated last year
- Predictor of TCR-epitope interactions☆34Updated last month
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- ☆80Updated 2 years ago
- ProCyon: A multimodal foundation model for protein phenotypes☆45Updated last month
- HLA-II ligand predictor.☆44Updated 2 years ago
- RiboNN: predicting translation efficiencies from mRNA sequences☆38Updated this week
- Knowledge-primed neural networks☆38Updated 2 years ago
- BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow☆38Updated last year
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆73Updated 2 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆52Updated 6 years ago
- Computational Optimization of DNA Activity (CODA)☆64Updated 6 months ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- This is the official codebase for methylGPT : a foundation model for the DNA methylome.☆47Updated 2 months ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆74Updated 7 months ago
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆41Updated 7 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆65Updated 3 years ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆41Updated last year
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆42Updated 3 months ago
- HLA-I ligand predictor☆43Updated 2 weeks ago
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆15Updated last month
- ☆35Updated 5 months ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆77Updated 2 months ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- Shiny app to easily create publishable plots for scientific papers☆36Updated 2 months ago
- Comprehensive Python client for the Uniprot REST API☆51Updated this week
- ☆27Updated 6 months ago
- Generalizable AI predicts immunotherapy outcomes across cancers and treatments☆39Updated last week
- Python Client Library for the G2P Portal API☆12Updated last month