Alternatives and similar repositories for language_models_biology

Users that are interested in language_models_biology are comparing it to the libraries listed below

• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆48Updated last year
• mims-harvard / ProCyon
  ProCyon: A multimodal foundation model for protein phenotypes
  ☆54Updated last month
• crazyhottommy / Machine_learning_drug_discovery
  ☆28Updated 8 months ago
• GfellerLab / MixTCRpred
  Predictor of TCR-epitope interactions
  ☆34Updated 3 months ago
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆74Updated 2 years ago
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆24Updated last year
• Sanofi-Public / RiboNN
  RiboNN: predicting translation efficiencies from mRNA sequences
  ☆46Updated 2 months ago
• pachterlab / gget_examples
  Examples for gget (https://github.com/pachterlab/gget).
  ☆39Updated 3 months ago
• pgmikhael / protgps
  ☆97Updated 6 months ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆66Updated 8 months ago
• mims-harvard / SPECTRA
  SPECTRA: Spectral framework for evaluation of biomedical AI models
  ☆41Updated 9 months ago
• ntranoslab / esm-variants
  ☆85Updated 2 years ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆58Updated last week
• TencentAILabHealthcare / DeepAIR
  ☆37Updated 2 years ago
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆25Updated 3 years ago
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆43Updated 5 months ago
• bowang-lab / Orthrus
  Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…
  ☆85Updated 2 weeks ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆45Updated 2 years ago
• Pharmaco-OmicsLab / EasyPubPlot
  Shiny app to easily create publishable plots for scientific papers
  ☆39Updated 4 months ago
• bioinformatics-sannio / ncrna-deep
  Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"
  ☆16Updated 4 years ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆54Updated 2 months ago
• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆44Updated last year
• albert-ying / MethylGPT
  This is the official codebase for methylGPT : a foundation model for the DNA methylome.
  ☆50Updated 4 months ago
• hsulab-arc / BridgeRNA2024
  ☆11Updated last year
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆50Updated last year
• TattaBio / DGEB
  Diverse Genomic Embedding Benchmark
  ☆50Updated 3 months ago
• OATML / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆65Updated 3 years ago
• ylaboratory / gene-embedding-benchmarks
  Benchmarking gene embeddings on single, paired, and gene set tasks
  ☆17Updated last month
• gzBiomedical / EpiScan
  Antibody-Specific Epitope Mapping
  ☆14Updated 3 months ago
• FPPGroup / CodonBERT
  CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
  ☆42Updated last year