swansonk14 / language_models_biologyLinks
☆17Updated last year
Alternatives and similar repositories for language_models_biology
Users that are interested in language_models_biology are comparing it to the libraries listed below
Sorting:
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- ProCyon: A multimodal foundation model for protein phenotypes☆39Updated 4 months ago
- ☆75Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆55Updated last year
- Diverse Genomic Embedding Benchmark☆46Updated 4 months ago
- ☆64Updated 9 months ago
- A method to predict DNA shape features considering farther flanking region.☆33Updated 10 months ago
- SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence☆27Updated 8 months ago
- Comprehensive Python client for the Uniprot REST API☆50Updated last month
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆70Updated 2 years ago
- Functional Embedding of Gene Signatures☆46Updated last year
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆48Updated 11 months ago
- ☆89Updated last month
- ☆11Updated 11 months ago
- ☆31Updated last year
- ☆43Updated 11 months ago
- Computational Optimization of DNA Activity (CODA)☆60Updated 3 months ago
- Examples for gget (https://github.com/pachterlab/gget).☆37Updated 2 months ago
- Feature map and function annotation of Proteins☆33Updated last year
- Genomic language model predicts protein co-regulation and function☆82Updated 4 months ago
- DeepECtransformer☆26Updated last year
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆33Updated 3 months ago
- HLA-II ligand predictor.☆44Updated 2 years ago
- BertSNR: an interpretable deep learning framework for single nucleotide resolution identification of transcription factor binding sites b…☆12Updated last month
- BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow☆36Updated 11 months ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆69Updated last week
- Phyla: Towards a Foundation Model for Phylogenetic Inference☆19Updated last month
- Multi-class signal peptide prediction and structure decoding model.☆89Updated 5 months ago
- Cross-protein transfer learning for variant effect prediction☆20Updated last year
- Code for LazyAF pipeline☆20Updated last year