Alternatives and similar repositories for HCA_Heart:

Users that are interested in HCA_Heart are comparing it to the libraries listed below

• matanhofree / crc-immune-hubs
  Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…
  ☆39Updated 3 years ago
• KChen-lab / METAFlux
  ☆57Updated 7 months ago
• cailab-tamu / scTenifoldKnk
  R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
  ☆43Updated last month
• ShellyCoder / cellcall
  inferring cell-cell communication from scRNA-seq of ligand-receptor
  ☆77Updated last year
• Teichlab / Pan_fetal_immune
  Collection of scripts for analysis of pan fetal immune atlas
  ☆26Updated 2 years ago
• Coolgenome / iTALK
  ☆59Updated 5 years ago
• Single-Cell-Genomics-Group-CNAG-CRG / Tumor-Immune-Cell-Atlas
  Code repository for the Tumor Immune Cell Atlas (TICA) project
  ☆62Updated 2 years ago
• immunogenomics / LISI
  Methods to compute Local Inverse Simpson's Index (LISI)
  ☆60Updated 3 years ago
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆59Updated 8 months ago
• ggjlab / HCL
  Tools used in Human Cell Landscape(HCL)
  ☆53Updated 4 years ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆99Updated 2 years ago
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆40Updated this week
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆67Updated 2 months ago
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆34Updated 4 years ago
• cssmillie / ulcerative_colitis
  ☆60Updated 4 years ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆72Updated 5 months ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆60Updated 9 months ago
• naomihabiblab / BEYOND_DLPFC
  Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease
  ☆48Updated 2 months ago
• mathyslab7 / ROSMAP_snRNAseq_PFC
  ☆29Updated last year
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆65Updated this week
• LocasaleLab / Single-Cell-Metabolic-Landscape
  Pipeline for exploring metebolic heterogeneity at single-cell resolution
  ☆74Updated 5 years ago
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆52Updated 10 months ago
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆53Updated 3 months ago
• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆42Updated 2 weeks ago
• data2intelligence / CytoSig
  ☆49Updated 4 months ago
• dpeerlab / magic
  MAGIC - imputation and de-noising single-cell RNA seq data sets
  ☆26Updated 5 years ago
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆100Updated 5 months ago
• icbi-lab / luca
  Single-cell Lung Cancer Atlas with 1.2M cells
  ☆59Updated last month
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆41Updated last year
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆94Updated last year