HPCBio / 16S-rDNA-dada2-pipeline
**DEFUNCT** dada2-based Nextflow pipeline for multiple amplicon data. See website for up-to-date version
☆19Updated 4 years ago
Related projects: ⓘ
- TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region☆19Updated 2 months ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Updated last year
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆43Updated 4 years ago
- Automatically calculate phylogenetic trees from bacterial core genes☆19Updated 8 months ago
- ☆18Updated last month
- Whole genome core alignments from multiple draft genomes☆12Updated 8 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆38Updated 4 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆39Updated 3 years ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆64Updated 4 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 5 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 5 years ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 3 years ago
- A method of assessing sequence complexity based on kmer frequencies☆26Updated 6 years ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆35Updated 2 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- A tool to quantify sub-genomic RNA (sgRNA) expression in SARS-CoV-2 artic network amplicon nanopore sequencing data.☆16Updated 2 years ago
- Find Unique genomic Regions☆29Updated 2 weeks ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆30Updated last week
- A set of workflows written in Nextflow for Genome Annotation.☆43Updated 2 months ago
- Influenza genome analysis Nextflow workflow☆22Updated last month
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- A package to annotate protein sequences☆53Updated 2 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆38Updated 4 years ago
- Hitting associations with k-mers☆46Updated 2 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆23Updated 6 years ago
- A fast tool for hybrid genome assembly of long and short reads☆74Updated 4 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 2 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆27Updated 2 weeks ago
- Rank-based Gene Ontology analysis of gene expression data☆38Updated last year