HPCBio / 16S-rDNA-dada2-pipelineLinks
**DEFUNCT** dada2-based Nextflow pipeline for multiple amplicon data. See website for up-to-date version
☆20Updated 5 years ago
Alternatives and similar repositories for 16S-rDNA-dada2-pipeline
Users that are interested in 16S-rDNA-dada2-pipeline are comparing it to the libraries listed below
Sorting:
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region☆20Updated 3 weeks ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- De novo assembly of nanopore reads using nextflow☆20Updated 4 years ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 3 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 3 years ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 2 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆16Updated 7 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 8 months ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Code for nanopore paper☆33Updated 9 years ago
- Maximum likelihood demultiplexing☆47Updated 3 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated 2 years ago
- Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3☆36Updated 2 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 6 months ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆20Updated this week
- A collection of modules and sub-workflows for Nextflow☆26Updated this week
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆34Updated 11 months ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Whole Genome Sequenceing Structural Variation Pipelines☆16Updated 6 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆46Updated 5 months ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated 11 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago