Beautify the phylogenetic tree using one Excel sheet only
☆18Mar 2, 2024Updated 2 years ago
Alternatives and similar repositories for TVBOT
Users that are interested in TVBOT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 7 months ago
- Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)☆12Aug 6, 2023Updated 3 years ago
- Papillomavirus genome annotation tool☆10May 2, 2023Updated 3 years ago
- Two pipelines to perform phylogenomic analysis☆12Oct 7, 2025Updated last year
- Extract SNPs and accessory differences in closely related bacterial genomes from k-mers☆10Jan 6, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A command line tool for quickly visualizing phylogenetic tree via a single command in terminal.☆10Apr 9, 2019Updated 7 years ago
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated last year
- post processing of bacterial pangenome gene presence/absence matrices☆68Jan 19, 2026Updated 9 months ago
- Development repo for pyani-plus (the next iteration of pyani)☆36Oct 19, 2026Updated last week
- A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio☆15Oct 16, 2026Updated 2 weeks ago
- In silico Penicillin Binding Protein (PBP) typer for Streptococcus pneumoniae assemblies☆10Aug 6, 2024Updated 2 years ago
- Bacterial GWAS analysis☆58Jun 12, 2026Updated 4 months ago
- TQSLE v1.0 released☆10Aug 29, 2023Updated 3 years ago
- Python Toolkit for using containerized programs in either Singularity or Docker☆31Mar 19, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- nf-core/taxprofiler post-processing; verification of classification results; consensus maps☆11Oct 22, 2026Updated last week
- ☆28Mar 23, 2024Updated 2 years ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆10Aug 28, 2018Updated 8 years ago
- This repository releases the model weights of ANNA16, an end-to-end tool that predicts 16S rRNA gene copy number (GCN) from 16S rRNA sequ…☆12Oct 17, 2026Updated last week
- A Python package to update the MLST database for the mlst tool.☆33Jul 22, 2026Updated 3 months ago
- Taxonomy manipulation for sylph (new version)☆12Sep 18, 2026Updated last month
- An R package to infer and analyze synteny networks from protein sequences☆43Jul 23, 2025Updated last year
- ☆30Feb 6, 2026Updated 8 months ago
- ttt☆10Apr 12, 2026Updated 6 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.☆31Feb 3, 2026Updated 8 months ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Jun 22, 2016Updated 10 years ago
- An efficient way to convert gff3 annotation files into EMBL format ready to submit.☆67Jul 31, 2025Updated last year
- Standard tools and protocols for MiSeq amplicon sequencing of 16S rRNA genes☆10Nov 14, 2022Updated 3 years ago
- A set of scripts for calculating pairwise SNP distance☆45Feb 19, 2026Updated 8 months ago
- Vanjari is a tool for the classification of viruses using neural networks☆14Nov 21, 2025Updated 11 months ago
- Module and script to remove contamination in assembled genomes before submission to ncbi☆14Jul 28, 2025Updated last year
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆61Sep 23, 2025Updated last year
- Lineage-aware Kraken2 refinement for long-read metagenomics☆17Oct 2, 2026Updated 3 weeks ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 6 years ago
- Chorus: Heterogeneous GPU+CPU Multiple Protein Sequences Alignment Search for Large Database☆17Apr 7, 2025Updated last year
- Professional Comprehensive Omics Data Analysis☆32Apr 3, 2026Updated 6 months ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆15Oct 1, 2021Updated 5 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆63May 5, 2026Updated 5 months ago
- Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …☆13May 12, 2022Updated 4 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆34Dec 4, 2025Updated 10 months ago