IEkAdN / BactSNPLinks
☆20Updated 6 years ago
Alternatives and similar repositories for BactSNP
Users that are interested in BactSNP are comparing it to the libraries listed below
Sorting:
- MetaCompass: Reference-guided Assembly of Metagenomes☆41Updated 4 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Scalable creating/updating of metagenome profiling databases☆62Updated 5 months ago
- ☆40Updated 4 years ago
- Microbiome classification pipeline☆65Updated 7 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- MAG Circularization Method☆32Updated last month
- Assessing and Improving the quality of metagenomic assemblies☆30Updated 3 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated 2 weeks ago
- Graph-based assembly phasing☆90Updated 3 weeks ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆43Updated 2 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆70Updated 3 weeks ago
- A toolkit for prokaryotic comparative genomics☆51Updated 2 months ago
- Bacterial GWAS analysis☆46Updated last month
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 4 months ago
- Strain Resolution ON Graphs☆49Updated 2 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 3 years ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 3 years ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated 3 months ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆45Updated 2 weeks ago
- Linking MAGs with 16S rRNA marker genes☆27Updated 10 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 5 years ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆43Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆38Updated 3 months ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago