IEkAdN / BactSNPLinks
☆18Updated 6 years ago
Alternatives and similar repositories for BactSNP
Users that are interested in BactSNP are comparing it to the libraries listed below
Sorting:
- Gene-flank analysis tool☆27Updated 6 months ago
- Workshop materials for the Second Benthic Invertebrates, Metagenomics, and Bioinformatics Workshop at the TAMUCC Harte Institute in Corpu…☆22Updated 7 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆31Updated 4 months ago
- HoCoRT - Remove specific organisms from sequencing reads☆16Updated 5 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- Strain Resolution ON Graphs☆48Updated last year
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 8 months ago
- MAG Circularization Method☆33Updated 3 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆24Updated last year
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Gene Absence Presence Identification tool.☆26Updated 3 months ago
- Snakemake pipeline for simulating shotgun metagenomic samples☆23Updated this week
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- A script for comparing old vs new versions of genome annotations☆21Updated last year
- Pangenome analysis of eukaryotes.☆18Updated 4 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 5 years ago
- Bacterial GWAS analysis☆40Updated last month
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated 2 years ago
- ☆18Updated 3 years ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 2 years ago
- aweMAGs: a fully automated workflow for eukariotic MAGs☆16Updated 2 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Genome-Genome circle synteny☆25Updated last year