IEkAdN / BactSNP
☆18Updated 6 years ago
Alternatives and similar repositories for BactSNP:
Users that are interested in BactSNP are comparing it to the libraries listed below
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated this week
- Gene-flank analysis tool☆27Updated 4 months ago
- MAG Circularization Method☆33Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆27Updated 2 months ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆19Updated last year
- Strain Resolution ON Graphs☆47Updated last year
- Bacterial GWAS analysis☆40Updated last week
- Discover and annotate the virome☆41Updated last week
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated last year
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆15Updated 2 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 4 months ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆24Updated 2 months ago
- ☆37Updated last year
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 7 months ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 6 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 9 months ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 9 months ago
- ☆45Updated last year
- Extract metadata from biosamples in NCBI☆14Updated 4 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- Assessing and Improving the quality of metagenomic assemblies☆28Updated 3 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Gene Absence Presence Identification tool.☆26Updated 3 weeks ago