mbourgey / EBI_cancer_workshop_SNVLinks
☆17Updated 3 years ago
Alternatives and similar repositories for EBI_cancer_workshop_SNV
Users that are interested in EBI_cancer_workshop_SNV are comparing it to the libraries listed below
Sorting:
- Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees…☆26Updated 3 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- ☆78Updated 11 years ago
- Make rapid visualizations of RNA-seq data in R☆19Updated 3 months ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- hands-on for NGS/SNParray CNV call trainning☆20Updated 3 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Flexible Bayesian inference of mutational signatures☆38Updated 2 years ago
- a set of NGS pipelines☆24Updated this week
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods☆16Updated 3 weeks ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- A program for summarising CpG methylation patterns☆20Updated 9 years ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…☆26Updated 5 years ago
- ☆18Updated 6 years ago
- Genomic data interpretation and visualization Workshop☆21Updated last month
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Updated 6 months ago
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- Adapters for trimming☆30Updated 6 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Updated 7 years ago
- An automated RNA-seq pipeline using Nextflow☆37Updated 3 weeks ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- ☆39Updated 4 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 7 months ago