Alternatives and similar repositories for scilife-python-course

Users that are interested in scilife-python-course are comparing it to the libraries listed below

• vals / python-gprofiler
  ☆12Updated 6 years ago
• SnakeChunks / SnakeChunks
  Modular blocks to build Snakemake workflows for reproducible NGS analyses
  ☆22Updated 6 years ago
• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆43Updated last month
• statOmics / zingeR
  zero-inflated negative binomial gene expression in R
  ☆20Updated 7 years ago
• broadinstitute / dropviz
  Shiny app for visualization, exploration of mouse brain single cell gene expression
  ☆11Updated 6 years ago
• Bioconductor / TENxBrainAnalysis
  R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics
  ☆12Updated 2 years ago
• mararie / lionessR
  Single sample network reconstruction in R
  ☆23Updated 5 years ago
• KlugerLab / t-SNE-Heatmaps
  Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq
  ☆48Updated 6 years ago
• leekgroup / recount
  R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
  ☆41Updated 9 months ago
• davismcc / workshop-scRNAseq-oxford-sep2016
  scRNA-seq workshop in Oxford on 9 September 2016
  ☆11Updated 9 years ago
• dcgerard / vicar
  Various Ideas for Confounder Adjustment in Regression
  ☆24Updated 2 years ago
• czbiohub-sf / tabula-muris-vignettes
  Examples analyses using the single-cell RNA-seq data from mouse cell atlases
  ☆23Updated 6 years ago
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated last year
• csoneson / countsimQC
  countsimQC - Compare characteristic features of count data sets
  ☆29Updated 2 months ago
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 5 years ago
• brentp / 450k-analysis-guide
  A Practical (And Opinionated) Guide To Analyzing 450K Data
  ☆35Updated 10 years ago
• MarioniLab / Deconvolution2016
  Code and manuscript files for Aaron and Karsten's deconvolution paper.
  ☆16Updated 6 years ago
• nellore / runs
  Scripts for reproducing analyses of large RNA-seq datasets
  ☆15Updated 6 years ago
• waldronlab / data-science-seminar
  Topics In Data Science and Bioinformatics
  ☆79Updated last year
• yanailab / moana
  Moana: Robust cell type classification of single-cell RNA-Seq data
  ☆24Updated 6 years ago
• cognoma / cancer-data
  TCGA data acquisition and processing for Project Cognoma
  ☆20Updated 7 years ago
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated 2 years ago
• seandavi / Bioc2017BigDataWorkshopSession
  Tutorial for working with cloud infrastructure and AWS from R
  ☆20Updated 8 years ago
• laurenhsu1 / corral
  Dimensionality reduction and batch integration methods for single cell data
  ☆16Updated 2 years ago
• lmweber / Rtsne-example
  Short example showing how to calculate and plot a 2D t-SNE projection from mass cytometry data in R
  ☆17Updated 9 years ago
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 5 years ago
• mikelove / asthma
  RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)
  ☆19Updated 7 years ago
• Bioconductor / UseBioconductor
  Training material for intermediate R / Bioconductor courses
  ☆17Updated 2 years ago
• mruffalo / sc-rna-seq-pipeline
  ☆22Updated 5 years ago
• statOmics / zinbwaveZinger
  Integrating zingeR with ZINB-WaVE weights
  ☆24Updated 7 years ago