meyer-lab-cshl / R-data-visualisation-courseLinks
☆11Updated 3 weeks ago
Alternatives and similar repositories for R-data-visualisation-course
Users that are interested in R-data-visualisation-course are comparing it to the libraries listed below
Sorting:
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- An R package to time somatic mutations☆63Updated 4 years ago
- binned motif enrichment analysis and visualisation☆41Updated last week
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated 2 months ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆41Updated 9 months ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 6 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- An R interface to the MEME Suite☆52Updated 3 months ago
- ☆23Updated 7 months ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 2 months ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- ☆39Updated 3 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 5 months ago
- A single cell sequencing read simulator.☆33Updated 11 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆85Updated 2 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆43Updated last year
- Cellsnake tool main repo☆33Updated last year
- Lightweight Iterative Gene set Enrichment in R☆57Updated 11 months ago
- Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)☆20Updated 3 years ago