Cobanoglu-Lab / EPEELinks
Effector and Perturbation Estimation Engine (EPEE) conducts differential analysis of transcription factor activity from gene expression data.
☆16Updated 6 years ago
Alternatives and similar repositories for EPEE
Users that are interested in EPEE are comparing it to the libraries listed below
Sorting:
- ☆21Updated 8 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 2 months ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28Updated last year
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Updated 3 years ago
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously☆37Updated 2 years ago
- Mean Alterations Using Discrete Expression☆14Updated last year
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 8 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Updated 5 years ago
- Code associated with MIX-seq manuscript☆15Updated 5 years ago
- kallisto index tag extractor☆20Updated 6 years ago
- sake☆29Updated 2 years ago
- Single-cell Scalable Visualization and Analytics☆27Updated 6 years ago
- Trans-association between HLA and TCR-CDR3☆19Updated 2 years ago
- ☆28Updated 7 years ago
- scRNAseq integration with triplet neural networks☆41Updated this week
- Exon-Intron Split Analysis (EISA) in R☆17Updated 3 months ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 7 years ago
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆46Updated 3 years ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆13Updated 2 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 7 years ago
- A study to compare methods for clustering of scRNA-seq data☆45Updated last year
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- ☆17Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- An R Package for Geneset Enrichment Workflows☆78Updated last month
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 7 years ago
- Single cell interactive plotting tools☆24Updated 5 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 4 years ago