Alternatives and similar repositories for deep-drug-response

Users that are interested in deep-drug-response are comparing it to the libraries listed below

• tavanaei / Cancer-Suppressor-Gene-Deep-Learning
  Cancer Suppressor Gene and Oncogene Prediction using Deep Learning (CNN)
  ☆10Updated 7 years ago
• cmap / lincs-workshop-2020
  CMap Notebooks for LINCS 2020 Workshop
  ☆46Updated 3 years ago
• Christensen-Lab-Dartmouth / PyMethylProcess
  Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.
  ☆36Updated 5 years ago
• mickaelleclercq / BioDiscML
  Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data
  ☆31Updated last month
• arefeen / DeepPASTA
  ☆10Updated 5 years ago
• yunchuankong / GEDFN
  GEDFN: Graph-Embedded Deep Feedforward Network
  ☆23Updated 6 years ago
• zj-zhang / AMBER
  Automated Modelling for Biological Evidence-based Research
  ☆46Updated last year
• bio-ontology-research-group / DeepMOCCA
  Graph Neural Network model for survival analysis from multi-omics data
  ☆14Updated 3 years ago
• JanZrimec / DeepExpression
  ☆34Updated 2 years ago
• MaayanLab / HarmonizomePythonScripts
  ☆25Updated 3 months ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• MaayanLab / archs4py
  Python package to load and query ARCHS4 data
  ☆23Updated last month
• KarchinLab / mhcnuggets
  MHC Class I and Class II neoantigen binding prediction
  ☆32Updated last month
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆36Updated 3 years ago
• CamaraLab / TDA-TCGA
  R package for the identification of cancer-associated mutated genes using gene expression and mutation data.
  ☆10Updated 3 years ago
• varnivey / ipanda
  insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…
  ☆25Updated 8 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated 2 years ago
• masato-ogishi / Repitope
  Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
  ☆24Updated last year
• kuijjerlab / retriever
  Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data
  ☆15Updated 3 years ago
• CSB5 / CaDRReS
  Cancer Drug Response prediction using a Recommender System
  ☆42Updated 2 years ago
• zeochoy / tcga-embedding
  using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data
  ☆21Updated 6 years ago
• UofLBioinformatics / circDeep
  End-to-End learning framework for circular RNA classification from other long non-coding RNA using multimodal deep learning
  ☆24Updated 5 years ago
• jiujiezz / deephlapan
  A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…
  ☆43Updated 2 years ago
• davidnboone / tcga_brca_rnaseq
  jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data
  ☆33Updated 6 years ago
• CCSB-DFCI / HuRI_paper
  Code for the analyses in the human reference interactome paper.
  ☆27Updated 2 years ago
• zuozhaorui / SWnet
  Core code for the paper "A deep learning model for drug response prediction from cancer genomic signatures and compound chemical structur…
  ☆20Updated 3 years ago
• umccr / neoantigens
  🏺 Exploring novel tumor epitope identification
  ☆36Updated 4 years ago
• ucscXena / xenaPython
  Python API for Xena Hub
  ☆53Updated 2 years ago
• ICGC-TCGA-PanCancer / TumorType-WGS
  Classifying tumor types based on Whole Genome Sequencing (WGS) data
  ☆48Updated last year
• SBRG / Protein_ML
  Machine learning workflows for analyzing high-throughput protein data
  ☆26Updated 8 years ago