bigbio / pmultiqc

Related projects: ⓘ

• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆29Updated last week
• kentsisresearchgroup / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆26Updated 6 years ago
• nf-core / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆31Updated 4 months ago
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆40Updated 2 weeks ago
• jessegmeyerlab / proteomics-tutorial
  ☆51Updated 4 months ago
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆21Updated 9 months ago
• cbielow / PTXQC
  A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
  ☆42Updated 6 months ago
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆26Updated 8 months ago
• pFindStudio / pFind3
  ☆23Updated 5 years ago
• yafeng / DEqMS
  DEqMS is a tool for quantitative proteomic analysis
  ☆20Updated 4 years ago
• jorainer / metabolomics2018
  Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
  ☆26Updated last year
• nf-core / metaboigniter
  Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
  ☆16Updated 3 months ago
• IFIproteomics / LFQbench
  ☆24Updated last year
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆29Updated 4 months ago
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆32Updated 3 months ago
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆47Updated last year
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆9Updated 3 years ago
• statisticalbiotechnology / diffacto
  ☆13Updated 6 months ago
• evocellnet / funscoR
  R package for functionally scoring phosphorylation sites
  ☆18Updated 4 years ago
• biocore / q2-qemistree
  Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".
  ☆31Updated last year
• LiChenPU / NetID
  A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery
  ☆43Updated last year
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆41Updated last week
• cpanse / protViz
  Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
  ☆11Updated 9 months ago
• HaoGroup-ProtContLib / Protein-Contaminant-Libraries-for-DDA-and-DIA-Proteomics
  This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…
  ☆18Updated 3 months ago
• Biobix / proteoformer
  Integration ribosome profiling - mass spectrometry
  ☆14Updated this week
• statisticalbiotechnology / triqler
  The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
  ☆19Updated 2 months ago
• shuzhao-li / mummichog
  pathway and network analysis for metabolomics
  ☆38Updated 3 months ago
• Vitek-Lab / MSstatsTMT
  R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …
  ☆26Updated 3 months ago
• MonashBioinformaticsPlatform / LFQ-Analyst
  The repo for LFQ-Analyst
  ☆28Updated last month
• RASpicer / MetabolomicsTools
  ☆54Updated 3 years ago