Alternatives and similar repositories for PTXQC

Users that are interested in PTXQC are comparing it to the libraries listed below

• Vitek-Lab / MSstats
  R package - MSstats
  ☆86Updated 2 weeks ago
• MonashBioinformaticsPlatform / LFQ-Analyst
  The repo for LFQ-Analyst
  ☆30Updated last year
• statOmics / MSqRob
  Robust statistical inference for quantitative LC-MS proteomics
  ☆34Updated 2 years ago
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆46Updated 2 weeks ago
• wenbostar / PDV
  PDV: an integrative proteomics data viewer
  ☆57Updated 3 months ago
• lgatto / MSnbase
  Base Classes and Functions for Mass Spectrometry and Proteomics
  ☆134Updated 2 months ago
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆96Updated last month
• YanglabWCH / StatsPro
  StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…
  ☆13Updated 3 years ago
• sneumann / mzR
  This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data…
  ☆46Updated last month
• fgcz / rawDiag
  Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package
  ☆36Updated last year
• vdemichev / diann-rpackage
  Report processing and protein quantification for MS-based proteomics
  ☆49Updated 2 years ago
• fgcz / rawrr
  Access Orbitrap data in R lang using C# .NET assembly - bioconductor package
  ☆58Updated last month
• IFIproteomics / LFQbench
  ☆24Updated 2 years ago
• lgatto / RforProteomics
  Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
  ☆97Updated 2 months ago
• jorainer / metabolomics2018
  Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
  ☆27Updated 2 years ago
• jpquast / protti
  Picotti lab data analysis package.
  ☆64Updated 6 months ago
• SlavovLab / DO-MS
  An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.
  ☆26Updated 7 months ago
• ftwkoopmans / msdap
  MS-DAP: downstream analysis pipeline for quantitative proteomics
  ☆39Updated 8 months ago
• statisticalbiotechnology / triqler
  The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
  ☆24Updated 3 weeks ago
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆62Updated this week
• cpanse / protViz
  Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
  ☆11Updated 4 months ago
• rformassspectrometry / QFeatures
  Quantitative features for mass spectrometry data
  ☆28Updated last week
• Proteomicslab57357 / UniprotR
  Retrieving Information of Proteins from Uniprot
  ☆71Updated last year
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆12Updated 4 years ago
• pwilmart / PAW_pipeline
  A Comet-based, best practices proteomics pipeline.
  ☆39Updated last year
• tidymass / tidymass
  tidymass
  ☆58Updated last month
• jessegmeyerlab / proteomics-tutorial
  ☆66Updated last year
• Vitek-Lab / MSstatsTMT
  R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …
  ☆29Updated 3 months ago
• smith-chem-wisc / MetaNetwork
  ☆11Updated 2 years ago
• DorresteinLaboratory / XCMS3_FeatureBasedMN
  ☆14Updated 3 years ago