A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
☆47Apr 23, 2026Updated last month
Alternatives and similar repositories for PTXQC
Users that are interested in PTXQC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SDRF: The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆106May 19, 2026Updated last week
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Jul 13, 2018Updated 7 years ago
- A library for QC report based on MultiQC framework☆32May 7, 2026Updated 2 weeks ago
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆24Apr 8, 2026Updated last month
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Apr 13, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Proteome Generator☆10Apr 18, 2019Updated 7 years ago
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Aug 25, 2022Updated 3 years ago
- Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package☆37May 1, 2024Updated 2 years ago
- ☆31Apr 28, 2026Updated 3 weeks ago
- PoGo is a proteogenomic tool which allows mapping of peptides identified through mass spectrometry to a reference genome through provided…☆12Jul 8, 2021Updated 4 years ago
- The repo for LFQ-Analyst☆30Aug 7, 2024Updated last year
- This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…☆11Nov 22, 2024Updated last year
- R package for annotating metagenomic datasets with taxonomic information☆10Feb 11, 2020Updated 6 years ago
- R package - MSstats☆97May 15, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Spatiotemporal Clustering and Inference of Omics Networks (SC-ION)☆12Oct 24, 2024Updated last year
- Spectral library searching using approximate nearest neighbor techniques.☆49Feb 11, 2026Updated 3 months ago
- Robust statistical inference for quantitative LC-MS proteomics☆33Dec 6, 2022Updated 3 years ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆71Jan 6, 2026Updated 4 months ago
- pyQms, generalized, fast and accurate mass spectrometry data quantification☆28Apr 24, 2026Updated last month
- PeakBot - detection of chromatographic and mz profile-mode peaks in LC-HRMS data☆23Feb 9, 2022Updated 4 years ago
- StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…☆13Mar 13, 2022Updated 4 years ago
- A tool for summarizing open search results☆16May 5, 2026Updated 3 weeks ago
- ☆46Mar 14, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- The codebase of the OpenMS project☆593Updated this week
- Python library for large-scale targeted metabolomics.☆23Mar 2, 2026Updated 2 months ago
- Visualization of multiple tandem mass spectrometry data☆10Jun 15, 2020Updated 5 years ago
- Code for 'Topological and kernel-based microbial phenotype prediction from MALDI-TOF mass spectra'☆12Apr 11, 2022Updated 4 years ago
- Reads data files acquired by MALDI-TOF MS on Bruker Daltonics machines of the *flex series☆14Oct 17, 2025Updated 7 months ago
- Discovery of biological sequence motifs in R☆28Dec 20, 2018Updated 7 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆75Apr 21, 2026Updated last month
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆54May 19, 2026Updated last week
- Library of snakemake rules.☆12Oct 2, 2018Updated 7 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- CLUMPS adapted to post-translational modifications.☆10May 22, 2025Updated last year
- A declarative API for writing XML documents for HUPO PSI-MS mzML and mzIdentML☆23Apr 17, 2026Updated last month
- qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment☆22May 6, 2026Updated 2 weeks ago
- Some shell scripts related to Thermo Fisher raw format conversion using msconvert☆15Feb 10, 2026Updated 3 months ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆83Mar 26, 2026Updated 2 months ago
- ☆16Jun 9, 2025Updated 11 months ago
- ☆17May 15, 2026Updated last week