A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
☆47Jul 16, 2026Updated last week
Alternatives and similar repositories for PTXQC
Users that are interested in PTXQC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SDRF: The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆114Updated this week
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Jul 13, 2018Updated 8 years ago
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆25Apr 8, 2026Updated 3 months ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Jun 5, 2026Updated last month
- Proteome Generator☆10Apr 18, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Aug 25, 2022Updated 3 years ago
- Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package☆37May 1, 2024Updated 2 years ago
- ☆32May 27, 2026Updated last month
- This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…☆11Nov 22, 2024Updated last year
- DEP package☆33Sep 28, 2022Updated 3 years ago
- The repo for LFQ-Analyst☆31Aug 7, 2024Updated last year
- Spatiotemporal Clustering and Inference of Omics Networks (SC-ION)☆12Oct 24, 2024Updated last year
- R package for annotating metagenomic datasets with taxonomic information☆10Feb 11, 2020Updated 6 years ago
- Spectral library searching using approximate nearest neighbor techniques.☆50Feb 11, 2026Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- pyQms, generalized, fast and accurate mass spectrometry data quantification☆28Updated this week
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆71Jan 6, 2026Updated 6 months ago
- StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…☆13Mar 13, 2022Updated 4 years ago
- R package for analysing proteomics data☆49Apr 17, 2023Updated 3 years ago
- ☆11Feb 9, 2019Updated 7 years ago
- A tool for summarizing open search results☆16May 5, 2026Updated 2 months ago
- A Comet-based, best practices proteomics pipeline.☆40Mar 21, 2024Updated 2 years ago
- The codebase of the OpenMS project☆610Updated this week
- Python library for large-scale targeted metabolomics.☆23Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Visualization of multiple tandem mass spectrometry data☆10Jun 15, 2020Updated 6 years ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆54Updated this week
- Discovery of biological sequence motifs in R☆28Dec 20, 2018Updated 7 years ago
- Reads data files acquired by MALDI-TOF MS on Bruker Daltonics machines of the *flex series☆14Oct 17, 2025Updated 9 months ago
- CLUMPS adapted to post-translational modifications.☆10May 22, 2025Updated last year
- Gene Set Enrichment Analysis in Python☆11Oct 26, 2018Updated 7 years ago
- A declarative API for writing XML documents for HUPO PSI-MS mzML and mzIdentML☆26Apr 17, 2026Updated 3 months ago
- Library of snakemake rules.☆13Oct 2, 2018Updated 7 years ago
- ☆48Mar 14, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆23Mar 15, 2024Updated 2 years ago
- ☆17Jul 16, 2026Updated last week
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆461Jun 30, 2026Updated 3 weeks ago
- Python package for efficient mass spectrometry data processing and visualization☆169Mar 5, 2026Updated 4 months ago
- ☆16Jun 9, 2025Updated last year
- RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.☆29May 22, 2026Updated 2 months ago
- PeakBot - detection of chromatographic and mz profile-mode peaks in LC-HRMS data☆24Feb 9, 2022Updated 4 years ago