Alternatives and similar repositories for psims:

Users that are interested in psims are comparing it to the libraries listed below

• statisticalbiotechnology / maracluster
  Matthew The's implementation of MaRaCluster
  ☆11Updated 2 years ago
• HUPO-PSI / mzSpecLib
  mzSpecLib: A standard format to exchange/distribute spectral libraries
  ☆27Updated 5 months ago
• BlaisProteomics / multiplierz
  The Multiplierz Proteomics Library
  ☆24Updated last year
• pyQms / pyqms
  pyQms, generalized, fast and accurate mass spectrometry data quantification
  ☆28Updated 10 months ago
• mafreitas / tdf2mzml
  ☆26Updated last year
• pnnl / deimos
  ☆32Updated 2 months ago
• bittremieux-lab / falcon
  Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.
  ☆28Updated last month
• compomics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆27Updated 3 weeks ago
• mobiusklein / brainpy
  A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations
  ☆21Updated 3 months ago
• OpenMS / pyopenms_viz
  Streamlining Mass Spectrometry Data Visualization with Pandas
  ☆14Updated this week
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆36Updated 2 weeks ago
• mobiusklein / ms_peak_picker
  A small library to provide peak picking for software processing mass spectrometry data
  ☆23Updated 5 months ago
• Villen-Lab / pyAscore
  A python package for fast post translational modification localization, powered by Cython.
  ☆19Updated last year
• jspaezp / elfragmentador
  This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…
  ☆10Updated 5 months ago
• iomega / ms2query
  MS2Query - machine learning assisted library querying of MS/MS spectra
  ☆44Updated 7 months ago
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆46Updated 2 months ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆43Updated 2 months ago
• mobiusklein / ms_deisotope
  A library for deisotoping and charge state deconvolution of complex mass spectra
  ☆36Updated 3 months ago
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆46Updated this week
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆24Updated 3 weeks ago
• michalsta / opentims
  Open-source C++ and Python module for opening binary timsTOF data files.
  ☆48Updated last month
• griquelme / tidyms
  TidyMS: Tools for working with MS data in untargeted metabolomics
  ☆55Updated 9 months ago
• biorack / simile
  ☆16Updated 2 years ago
• abdrakhimov1 / Biosaur
  ☆14Updated 3 years ago
• MatteoLacki / timspy
  ☆20Updated 3 years ago
• pFindStudio / pGlyco3
  ☆18Updated 2 months ago
• theGreatHerrLebert / sagepy
  A python interface to the SAGE search engine for mass spectrometry proteomics
  ☆13Updated 3 weeks ago
• matchms / ms2deepscore
  Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity
  ☆60Updated 2 months ago
• gtluu / timsconvert
  ☆37Updated last month
• XiminHu / mass-suite
  ☆25Updated last year