Alternatives and similar repositories for psims

Users that are interested in psims are comparing it to the libraries listed below

• HUPO-PSI / mzSpecLib
  mzSpecLib: A standard format to exchange/distribute spectral libraries
  ☆27Updated last month
• mobiusklein / ms_peak_picker
  A small library to provide peak picking for software processing mass spectrometry data
  ☆23Updated 9 months ago
• OpenMS / pyopenms_viz
  Streamlining Mass Spectrometry Data Visualization with Pandas
  ☆20Updated last week
• pyQms / pyqms
  pyQms, generalized, fast and accurate mass spectrometry data quantification
  ☆28Updated 2 weeks ago
• frallain / pymsfilereader
  Thermo MSFileReader Python bindings
  ☆69Updated 4 years ago
• bittremieux-lab / falcon
  Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.
  ☆33Updated last month
• pnnl / deimos
  ☆36Updated 3 months ago
• MatteoLacki / timspy
  ☆20Updated 4 years ago
• mobiusklein / brainpy
  A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations
  ☆22Updated 3 months ago
• iomega / ms2query
  MS2Query - machine learning assisted library querying of MS/MS spectra
  ☆47Updated 3 months ago
• mobiusklein / ms_deisotope
  A library for deisotoping and charge state deconvolution of complex mass spectra
  ☆41Updated last month
• MetaSys-LISBP / IsoCor
  IsoCor: Isotope Correction for mass spectrometry labeling experiments
  ☆24Updated 4 months ago
• BlaisProteomics / multiplierz
  The Multiplierz Proteomics Library
  ☆24Updated last year
• michaelmarty / UniDec
  Universal Deconvolution of Mass and Ion Mobility Spectra
  ☆77Updated last month
• biosustain / pyOpenMS_UmetaFlow
  Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)
  ☆22Updated 10 months ago
• biorack / simile
  ☆16Updated 3 years ago
• mafreitas / tdf2mzml
  ☆26Updated last year
• bihealth / NeatMS
  NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.
  ☆33Updated 4 years ago
• statisticalbiotechnology / maracluster
  Matthew The's implementation of MaRaCluster
  ☆11Updated 2 months ago
• griquelme / tidyms
  TidyMS: Tools for working with MS data in untargeted metabolomics
  ☆55Updated last year
• YuanyueLi / MSEntropy
  Spectral entropy for mass spectrometry data.
  ☆32Updated last month
• Philipbear / msbuddy
  a python package for molecular formula analysis in MS-based small molecule studies
  ☆31Updated 2 months ago
• RogerGinBer / RHermes
  RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.
  ☆28Updated 3 months ago
• domdfcoding / pynist
  PyMassSpec extension for searching mass spectra using NIST's Mass Spectrum Search Engine.
  ☆22Updated 2 weeks ago
• gtluu / timsconvert
  ☆39Updated 6 months ago
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆29Updated last month
• michalsta / opentims
  Open-source C++ and Python module for opening binary timsTOF data files.
  ☆49Updated 3 months ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆48Updated 6 months ago
• wilhelm-lab / spectrum_fundamentals
  Fundamentals public repo
  ☆11Updated 2 weeks ago
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆43Updated 3 weeks ago