Alternatives and similar repositories for maxquant-pipeline

Users that are interested in maxquant-pipeline are comparing it to the libraries listed below

• MaayanLab / biojupies
  Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
  ☆119Updated 7 months ago
• babelomics / babelomics
  ☆42Updated 7 years ago
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆99Updated last year
• lwgray / pyEntrezId
  Converts Ensembl, Uniprot, and HGNC IDs to Entrez Gene Id
  ☆47Updated 2 years ago
• ding-lab / hotspot3d
  3D hotspot mutation proximity analysis tool
  ☆52Updated 2 years ago
• sebriois / biomart
  Python biomart API
  ☆69Updated 2 years ago
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆50Updated 6 years ago
• nunofonseca / irap
  integrated RNA-seq Analysis Pipeline
  ☆84Updated 6 years ago
• lehtiolab / proteogenomics-analysis-workflow
  IPAW: a Nextflow workflow for proteogenomics
  ☆29Updated last year
• VCCRI / Falco
  A quick and flexible single-cell RNA-seq processing framework on the cloud
  ☆39Updated 6 years ago
• openvax / neoantigen-vaccine-pipeline
  Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines
  ☆89Updated 4 months ago
• openvax / pepdata
  Python interface to amino acid properties and IEDB
  ☆57Updated last year
• biothings / mygene.info
  MyGene.info: A BioThings API for gene annotations
  ☆130Updated 4 months ago
• vanessajurtz / lasagne4bio
  ☆107Updated 7 years ago
• lgatto / RforProteomics
  Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
  ☆99Updated 5 months ago
• MaayanLab / archs4
  ARCHS4 RNA-seq processing scripts and web server pages.
  ☆62Updated 5 years ago
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆47Updated 9 years ago
• antigenomics / vdjdb-db
  🗂️ [vdjdb.com is up and running!] Git-based TCR database storage & management. Submissions welcome!
  ☆150Updated 3 weeks ago
• CompOmics / denovogui
  Graphical user interface for de novo sequencing of tandem mass spectra
  ☆15Updated last year
• workflow4metabolomics / tools-metabolomics
  Galaxy tools for metabolomics maintained by Workflow4Metabolomics
  ☆30Updated this week
• hart-lab / drugz
  DRUGZ software
  ☆25Updated 4 years ago
• HussainAther / awesome-alternative-splicing
  Alternative splicing resource
  ☆58Updated 7 years ago
• nh2tran / DeepNovo-DIA
  De novo peptide sequencing for DDA and DIA by deep learning
  ☆39Updated 5 years ago
• crazyhottommy / machine-learning-resource
  ☆87Updated last year
• MaayanLab / Zika-RNAseq-Pipeline
  An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study
  ☆103Updated 3 years ago
• Xinglab / DARTS
  Deep-learning Augmented RNA-seq analysis of Transcript Splicing
  ☆115Updated last year
• kentsislab / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆27Updated 7 years ago
• baoilleach / BioinformaticsPracticals
  Practical Introduction to Bioinformatics and Systems Biology with R (mainly)
  ☆20Updated 15 years ago
• andrewrech / antigen.garnish
  ☆48Updated 3 years ago
• ecnuzdd / PhosMap
  A Comprehensive R Package For Analyzing Quantitative Phosphoproteomics Data
  ☆13Updated 3 years ago