FredHutch / maxquant-pipeline
MaxQuant Automated Pipeline
☆21Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for maxquant-pipeline
- IPAW: a Nextflow workflow for proteogenomics☆25Updated 3 months ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆48Updated 5 years ago
- Galaxy tools for metabolomics maintained by Workflow4Metabolomics☆25Updated last week
- R package for analysing proteomics data☆48Updated last year
- Graphical user interface for de novo sequencing of tandem mass spectra☆14Updated 8 months ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆33Updated 3 weeks ago
- 3D hotspot mutation proximity analysis tool☆46Updated last year
- ☆24Updated 5 years ago
- metaX: a flexible and comprehensive software for processing omics data.☆23Updated last year
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Updated 6 years ago
- SeqMonk NGS visualisation and analysis tool☆49Updated last month
- ☆46Updated 2 years ago
- A guide to running MaxQuant in Linux☆31Updated 4 years ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆17Updated 7 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆31Updated 6 months ago
- Python package to plot sequence logos☆29Updated last year
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- ☆41Updated 6 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆23Updated last year
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆46Updated 5 years ago
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆27Updated last week
- software for the analysis and visualization of deep mutational scanning data☆32Updated 2 years ago
- FASTAptamer: A Bioinformatic Toolkit for High-Throughput Sequence Analysis of Combinatorial Selections☆10Updated last month
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated 10 months ago
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆34Updated 3 years ago
- An easy-to-use way for running Galaxy workflows.☆20Updated 5 years ago
- Python biomart API☆63Updated last year
- The wiki repo, with pull request enabled, for the rnaseq_tutorial☆25Updated 4 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆25Updated last year
- Galaxy RNA workbench☆39Updated 4 years ago