MaxQuant Automated Pipeline
☆24Jun 13, 2020Updated 6 years ago
Alternatives and similar repositories for maxquant-pipeline
Users that are interested in maxquant-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python3 wrapper for GATB-Core.☆10Dec 16, 2017Updated 8 years ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Jul 13, 2018Updated 8 years ago
- Training and using TFFM/PSSM/4-bits + DNA shape classifiers☆13Jun 11, 2018Updated 8 years ago
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- Biopet docs☆17Aug 2, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A comprehensive pipeline to analyze and visualize structural variants☆20Jan 28, 2020Updated 6 years ago
- Analysis of Cancer Genomes; 2017 edition☆16Jan 21, 2018Updated 8 years ago
- This repository contains a list of tools or methods that have been used in GIAB analysis☆28Nov 15, 2019Updated 6 years ago
- A bash script for an automated Rosetta Abinitio folding simulation on an HPC☆11Aug 29, 2020Updated 6 years ago
- Kart: A divide-and-conquer algorithm for NGS read mapping with high error tolerance☆26May 21, 2020Updated 6 years ago
- ☆14Mar 18, 2016Updated 10 years ago
- R package for analysing proteomics data☆49Apr 17, 2023Updated 3 years ago
- A digital garden on science in the era of computers and networks (moved to https://codeberg.org/khinsen/science-in-the-digital-era)☆11Dec 18, 2023Updated 2 years ago
- ☆18Sep 28, 2015Updated 10 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Sankey Diagrams☆23Jan 15, 2016Updated 10 years ago
- ☆12Feb 12, 2024Updated 2 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Jun 5, 2017Updated 9 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Feb 12, 2021Updated 5 years ago
- A repository for the winners of the NASA Mars Spectrometry challenge☆10Aug 25, 2023Updated 3 years ago
- Smart VCF parser DSL☆84May 24, 2022Updated 4 years ago
- Files and Colab notebooks for my course on Python for healthcare statistics.☆15Apr 2, 2020Updated 6 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆19Oct 18, 2019Updated 6 years ago
- Create Bloom filters for a given reference and then use it to categorize sequences☆78Nov 26, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Obsidian Web Clipper Chrome Extension to save articles and pages from the web in Obsidian☆12Mar 26, 2025Updated last year
- TCGA data acquisition and processing for Project Cognoma☆23Apr 19, 2018Updated 8 years ago
- The Soft/Hard Inference through Classification tool for detecting hard and soft selective sweeps☆14Feb 2, 2021Updated 5 years ago
- (discontinued) GPFS Current Activity Monitor using Python with ncurses☆14Aug 26, 2021Updated 5 years ago
- Paired-seq☆15Jul 17, 2024Updated 2 years ago
- 📈➡️💾 A Flask application which extends Tableau to be used as an ETL tool.☆18Oct 20, 2023Updated 2 years ago
- Coming Soon...☆10Mar 14, 2022Updated 4 years ago
- 15x4.org☆16Jun 21, 2022Updated 4 years ago
- ☆42Jul 17, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- DART-ID: retention time alignment and peptide identification confidence updates☆18Mar 17, 2025Updated last year
- Implementations of compression schemes for numeric data from mass spectrometers.☆14Mar 3, 2021Updated 5 years ago
- A Python Package for Mendelian Randomization Analysis☆18Sep 8, 2017Updated 9 years ago
- Quantifiable predictive features define epitope-specific T cell receptor repertoires☆13Dec 8, 2022Updated 3 years ago
- Nextflow-powered MS-DIAL☆15May 30, 2026Updated 3 months ago
- ☆10Oct 12, 2023Updated 2 years ago
- ☆15Sep 22, 2022Updated 3 years ago