A guide to running MaxQuant in Linux
☆36Feb 10, 2020Updated 6 years ago
Alternatives and similar repositories for maxquant_linux_guide
Users that are interested in maxquant_linux_guide are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Jul 13, 2018Updated 8 years ago
- A Snakemake-based pipeline for gene mapping in Triticeae.☆11Mar 5, 2022Updated 4 years ago
- The repo for LFQ-Analyst☆31Aug 7, 2024Updated last year
- A easy-to-use Python API for Primer3 primer design.☆16Nov 10, 2022Updated 3 years ago
- reorganize paper of deconvolution method☆11Dec 14, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Companion repository for the human variant calling pipeline comparison paper☆12Feb 21, 2022Updated 4 years ago
- A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data☆12Apr 25, 2023Updated 3 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆22May 25, 2021Updated 5 years ago
- Extracts fastq reads for specified barcode(s) from one or multiple FASTQ files☆13Jan 31, 2016Updated 10 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Oct 15, 2018Updated 7 years ago
- Find target sites for the miRNAs in genomic sequences☆18Jun 25, 2017Updated 9 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆45Mar 25, 2023Updated 3 years ago
- Package for pooling the results from (dependent) tests☆12Dec 1, 2025Updated 7 months ago
- Unofficial repo for software vendoring or packaging purposes☆23Oct 23, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆27Feb 24, 2025Updated last year
- An R shiny app to explore the influence of the normality and independence assumptions (and their violation) on the validity (i.e. the typ…☆13Aug 24, 2020Updated 5 years ago
- An unbiased method for genome-wide CBE off-targets assessment☆13Mar 9, 2023Updated 3 years ago
- Holds the code and data to reproduce the analyses of Danaher & Kim et a;, "Advances in mixed cell deconvolution enable quantification of …☆12Dec 8, 2021Updated 4 years ago
- ☆10Jul 29, 2020Updated 5 years ago
- Nonparametric Analysis of Response Curves from Thermal Proteome Profiling Experiments☆13May 8, 2023Updated 3 years ago
- Using R and Bioconductor packages for the analysis and comprehension of proteomics data.☆105Updated this week
- ☆16Sep 21, 2021Updated 4 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The Interactive Peptide Spectral Annotator☆23Jun 9, 2020Updated 6 years ago
- ☆24Feb 26, 2023Updated 3 years ago
- ChIA-PET, HiChIP, PLAC-Seq data analysis, with linker detection, linker filter, or restriction process for HiChIP, mapping, call cluster …☆22Jul 19, 2024Updated 2 years ago
- A set of command line tools based on R and JavaScript.☆17Apr 21, 2020Updated 6 years ago
- ☆13May 30, 2023Updated 3 years ago
- ☆12Feb 14, 2023Updated 3 years ago
- Sliding window dN/dS vs. functional protein domain comparison tool. Given VectorBase gene id inputs it will aggregate various useful Bioi…☆20Dec 10, 2024Updated last year
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated last year
- MetaProteomeAnalyzer (MPA) software for analyzing and visualizing MS-based metaproteomics data.☆34Aug 25, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Central repository for the Multiplexed Tissue Imaging Workshop 2023.☆10Jan 9, 2023Updated 3 years ago
- Package for analysis and characterization of differential TADs☆27Updated this week
- An R package for ECM molecule annotation, classification, and analysis☆14Sep 20, 2024Updated last year
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆24Apr 5, 2023Updated 3 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆45Jul 6, 2020Updated 6 years ago
- ClustVis web tool☆56Jun 15, 2020Updated 6 years ago
- Example CellProfiler pipelines.☆20Jul 19, 2022Updated 4 years ago