A guide to running MaxQuant in Linux
☆36Feb 10, 2020Updated 6 years ago
Alternatives and similar repositories for maxquant_linux_guide
Users that are interested in maxquant_linux_guide are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Jul 13, 2018Updated 7 years ago
- ☆23Oct 30, 2022Updated 3 years ago
- A Snakemake-based pipeline for gene mapping in Triticeae.☆11Mar 5, 2022Updated 4 years ago
- Public repository for building and analyzing protein complex maps☆12Dec 6, 2016Updated 9 years ago
- A easy-to-use Python API for Primer3 primer design.☆16Nov 10, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- reorganize paper of deconvolution method☆11Dec 14, 2023Updated 2 years ago
- Extracts fastq reads for specified barcode(s) from one or multiple FASTQ files☆13Jan 31, 2016Updated 10 years ago
- Companion repository for the human variant calling pipeline comparison paper☆12Feb 21, 2022Updated 4 years ago
- A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data☆12Apr 25, 2023Updated 3 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆22May 25, 2021Updated 5 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆45Mar 25, 2023Updated 3 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Oct 15, 2018Updated 7 years ago
- Find target sites for the miRNAs in genomic sequences☆18Jun 25, 2017Updated 9 years ago
- Conversion of a BAM alignment to wiggle and bigwig coverage files, with flexible reporting options☆16May 7, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- An unbiased method for genome-wide CBE off-targets assessment☆13Mar 9, 2023Updated 3 years ago
- An R shiny app to explore the influence of the normality and independence assumptions (and their violation) on the validity (i.e. the typ…☆13Aug 24, 2020Updated 5 years ago
- Unofficial repo for software vendoring or packaging purposes☆23Oct 23, 2017Updated 8 years ago
- ☆26Feb 24, 2025Updated last year
- ☆10Jul 29, 2020Updated 5 years ago
- Nonparametric Analysis of Response Curves from Thermal Proteome Profiling Experiments☆13May 8, 2023Updated 3 years ago
- ☆16Sep 21, 2021Updated 4 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 4 years ago
- A set of command line tools based on R and JavaScript.☆17Apr 21, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆12Feb 14, 2023Updated 3 years ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated last year
- Package for analysis and characterization of differential TADs☆27Apr 25, 2022Updated 4 years ago
- ☆24Feb 26, 2023Updated 3 years ago
- An R package for ECM molecule annotation, classification, and analysis☆14Sep 20, 2024Updated last year
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Jul 6, 2020Updated 5 years ago
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆24Apr 5, 2023Updated 3 years ago
- ClustVis web tool☆56Jun 15, 2020Updated 6 years ago
- Metagenomics Analysis Tools☆24May 7, 2018Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Sliding window dN/dS vs. functional protein domain comparison tool. Given VectorBase gene id inputs it will aggregate various useful Bioi…☆20Dec 10, 2024Updated last year
- A tool for performing collinearity-incorporating homology inference☆34Oct 7, 2023Updated 2 years ago
- A Shiny-based server framework for retrieving, analyzing and visualizing the large genomic variations data in a lab.☆20Oct 28, 2024Updated last year
- A (very) simple script to QC Hi-C data.☆27Feb 25, 2026Updated 4 months ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Apr 9, 2019Updated 7 years ago
- DART-ID: retention time alignment and peptide identification confidence updates☆18Mar 17, 2025Updated last year
- predicting peptide and TCR interaction☆20Jan 27, 2021Updated 5 years ago