A guide to running MaxQuant in Linux
☆35Feb 10, 2020Updated 6 years ago
Alternatives and similar repositories for maxquant_linux_guide
Users that are interested in maxquant_linux_guide are comparing it to the libraries listed below
Sorting:
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Jul 13, 2018Updated 7 years ago
- A easy-to-use Python API for Primer3 primer design.☆16Nov 10, 2022Updated 3 years ago
- ☆23Oct 30, 2022Updated 3 years ago
- A Snakemake-based pipeline for gene mapping in Triticeae.☆11Mar 5, 2022Updated 3 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Mar 25, 2023Updated 2 years ago
- reorganize paper of deconvolution method☆11Dec 14, 2023Updated 2 years ago
- Public repository for building and analyzing protein complex maps☆11Dec 6, 2016Updated 9 years ago
- Companion repository for the human variant calling pipeline comparison paper☆11Feb 21, 2022Updated 4 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 4 years ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆14May 17, 2025Updated 9 months ago
- Extracts fastq reads for specified barcode(s) from one or multiple FASTQ files☆13Jan 31, 2016Updated 10 years ago
- ☆13May 30, 2023Updated 2 years ago
- The repo for LFQ-Analyst☆30Aug 7, 2024Updated last year
- Streamlined duo/trio analysis and pedigree haplotyping: from VCF to interactive HTML☆15Oct 30, 2024Updated last year
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆17Jan 19, 2018Updated 8 years ago
- Conversion of a BAM alignment to wiggle and bigwig coverage files, with flexible reporting options☆16May 7, 2019Updated 6 years ago
- An unbiased method for genome-wide CBE off-targets assessment☆13Mar 9, 2023Updated 2 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Oct 15, 2018Updated 7 years ago
- ☆18Jun 23, 2021Updated 4 years ago
- Snakemake workflow for neoantigen prediction☆15Sep 7, 2023Updated 2 years ago
- ☆16Sep 21, 2021Updated 4 years ago
- Metagenomics Analysis Tools☆24May 7, 2018Updated 7 years ago
- De novo peptide sequencing for DDA and DIA by deep learning☆40Nov 26, 2020Updated 5 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆22May 25, 2021Updated 4 years ago
- Benchmarking of CNV calling tools☆18May 18, 2019Updated 6 years ago
- A set of command line tools based on R and JavaScript.☆18Apr 21, 2020Updated 5 years ago
- predicting peptide and TCR interaction☆20Jan 27, 2021Updated 5 years ago
- The Interactive Peptide Spectral Annotator☆21Jun 9, 2020Updated 5 years ago
- ☆20Sep 25, 2020Updated 5 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Apr 9, 2019Updated 6 years ago
- RNASeqReadSimulator is a simple tool to generate simulated single-end or paired-end RNA-Seq reads.☆21Oct 16, 2014Updated 11 years ago
- Trimming tool for Oxford Nanopore sequence data☆22Jun 22, 2021Updated 4 years ago
- Find target sites for the miRNAs in genomic sequences☆18Jun 25, 2017Updated 8 years ago
- A Shiny-based server framework for retrieving, analyzing and visualizing the large genomic variations data in a lab.☆19Oct 28, 2024Updated last year
- This is a python package for genomics study with a GCN framework.☆44Dec 12, 2024Updated last year
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Jul 6, 2020Updated 5 years ago
- MetNormalizer is used to normalize large scale metabolomics data.☆22Mar 3, 2021Updated 4 years ago
- ClustVis web tool☆55Jun 15, 2020Updated 5 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Sep 28, 2022Updated 3 years ago