Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers.
☆26Apr 13, 2025Updated 10 months ago
Alternatives and similar repositories for docker4seq
Users that are interested in docker4seq are comparing it to the libraries listed below
Sorting:
- rCASC: reproducible Classification Analysis of Single Cell Sequencing Data☆15Apr 15, 2025Updated 10 months ago
- OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning …☆35Jan 16, 2026Updated last month
- The Cancer bioMarker Prediction Pipeline (CAMPP)☆19Oct 25, 2020Updated 5 years ago
- Design of single- and multi-stage multi-arm clinical trials☆15Jan 4, 2024Updated 2 years ago
- Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data☆21Apr 24, 2019Updated 6 years ago
- Package that facilitates pulling database entries from KEGG via its REST API☆11Feb 21, 2026Updated last week
- 🔬 R package: Analysis of Large Affymetrix Microarray Data Sets☆12Dec 14, 2025Updated 2 months ago
- scBoolSeq: scRNA-Seq data binarisation and synthetic generation from Boolean dynamics☆13Aug 13, 2025Updated 6 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆83Jun 9, 2022Updated 3 years ago
- ☆91Aug 29, 2025Updated 6 months ago
- defusion☆14Aug 24, 2021Updated 4 years ago
- Higher level repo for aggregating all of Atlas workflow logic for Single Cell☆14Updated this week
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆54Dec 11, 2025Updated 2 months ago
- Merge transcriptome read-to-genome alignments into non-redundant transcript models☆20Jan 21, 2026Updated last month
- Long-read Isoform Quantification and Analysis☆38Mar 25, 2025Updated 11 months ago
- ☆17May 15, 2024Updated last year
- Calculate GC% and GC deviation for circular genomes☆17Oct 15, 2025Updated 4 months ago
- Shirin's playgRound - exploring and playing with data in R☆18May 7, 2019Updated 6 years ago
- iS-CellR: interactive graphical tool for analysis of single-cell RNAseq data☆24Oct 9, 2019Updated 6 years ago
- Incremental building of phylogenetic distance trees☆28Feb 19, 2026Updated last week
- BISulfite-seq CUI Toolkit☆26Feb 17, 2026Updated last week
- SCelVis - web-based visualization of single-cell data. Demo☆22Mar 20, 2024Updated last year
- Analysis of results of the Data Science Bowl 2018☆22Jun 16, 2020Updated 5 years ago
- Convolutional neural network for categorising prostate cancer from MRI images.☆11Jul 22, 2020Updated 5 years ago
- Explore the cancer relevance of your gene list☆52Dec 17, 2025Updated 2 months ago
- A command line tool to compute mapping statistics from a BAM file☆25Mar 7, 2022Updated 3 years ago
- ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data☆22May 21, 2024Updated last year
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆23Apr 5, 2023Updated 2 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Apr 8, 2022Updated 3 years ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆22Jul 11, 2021Updated 4 years ago
- Mastering Shiny Book Club☆26Feb 5, 2025Updated last year
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Apr 10, 2023Updated 2 years ago
- ☆53Mar 7, 2023Updated 2 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆55Feb 19, 2021Updated 5 years ago
- Human brain, >200,000 nuclei☆24Jun 17, 2021Updated 4 years ago
- Deep learning for identifying important motifs in DNA sequences. Exploration of the structure of the human genome by training neural netw…☆25Nov 16, 2020Updated 5 years ago
- Platform for Interactive analysis and Visualization Of Transcriptomics data☆26Jun 9, 2020Updated 5 years ago
- Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie…☆27Dec 21, 2022Updated 3 years ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆21Apr 28, 2020Updated 5 years ago