ncbi / tree-toolLinks
Incremental building of phylogenetic distance trees
☆27Updated this week
Alternatives and similar repositories for tree-tool
Users that are interested in tree-tool are comparing it to the libraries listed below
Sorting:
- ☆15Updated 8 months ago
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆111Updated last week
- ncbi-vdb☆92Updated this week
- NCBI C++ Toolkit package sources☆82Updated this week
- ☆36Updated 8 months ago
- NanoDJ: A Dockerized Jupyter Notebook for Interactive Oxford Nanopore MinION Sequence Manipulation and Genome Assembly☆50Updated 6 years ago
- ☆69Updated 2 years ago
- SRAToolkit has been REPLACED - see README☆37Updated 9 years ago
- ☆17Updated 3 weeks ago
- A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…☆37Updated 3 weeks ago
- Phylogenetic tree library for JavaScript/Node.js☆36Updated 3 years ago
- ☆41Updated last week
- Store of the trained model for pangolin to access.☆55Updated 3 years ago
- Standard bioinformatics pipelines for omics data from spaceflight and space-relevant experiments.☆99Updated last month
- GenomeWarp translates genetic variants from one genome assembly version to another.☆97Updated 2 years ago
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Updated last year
- A versatile compressor of third generation sequencing reads.☆52Updated last year
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36Updated 3 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health con…☆59Updated this week
- A collection of publications on comparison of high-throughput sequencing technologies.☆27Updated 2 weeks ago
- The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized f…☆14Updated 2 years ago
- The Dazzler Data Base☆36Updated 10 months ago
- RNA-Seq Mutation Detection☆28Updated 4 years ago
- Minia is a short-read assembler based on a de Bruijn graph☆76Updated 11 months ago
- Local Lineage and Monophyly Assessment☆16Updated 4 years ago
- software for UCE (and general) phylogenomics☆87Updated 3 weeks ago
- The BaitFisher-package is a software package for designing hybrid enrichment probes. For more information see:☆13Updated 4 years ago
- The BioPerl Web site: http://bioperl.org☆14Updated 6 years ago
- Utilities for building and managing bioconda recipes☆103Updated last month
- A pipeline for the computational evaluation of RNA-Seq data☆39Updated last year