Alternatives and similar repositories for tree-tool

Users that are interested in tree-tool are comparing it to the libraries listed below

• NLM-DIR / ribovore
  ☆17Updated last week
• NLM-DIR / vadr
  Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation
  ☆114Updated 3 weeks ago
• ncbi / magicblast
  ☆36Updated 9 months ago
• ncbi / ncbi-vdb
  ncbi-vdb
  ☆93Updated 2 weeks ago
• rambaut / figtree.js
  Phylogenetic tree library for JavaScript/Node.js
  ☆37Updated 3 years ago
• ncbi / ncbi-cxx-toolkit-public
  NCBI C++ Toolkit package sources
  ☆87Updated this week
• nextstrain / ncov-ingest
  A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…
  ☆37Updated this week
• nextstrain / mpox
  Nextstrain build for mpox virus
  ☆50Updated this week
• ncbi / sratoolkit
  SRAToolkit has been REPLACED - see README
  ☆38Updated 9 years ago
• BioPP / bppsuite
  Bio++ Program Suite
  ☆18Updated this week
• aineniamh / squirrel
  ☆20Updated last week
• maximilianh / multiSub
  Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…
  ☆36Updated 3 years ago
• ncbi / sra-human-scrubber
  An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…
  ☆51Updated 6 months ago
• andersen-lab / bjorn
  ☆22Updated 11 months ago
• Nazeeefa / awesome-sequencing-tech
  A collection of publications on comparison of high-throughput sequencing technologies.
  ☆27Updated 2 months ago
• IKIM-Essen / uncovar
  Transparent and robust SARS-CoV-2 variant calling and lineage assignment with comprehensive reporting.
  ☆22Updated last week
• rcedgar / palmdb
  Database of virus RdRP barcode sequences
  ☆16Updated last year
• ncbi / rapt
  This RAPT repository has been retired as of December 2024. NCBI's Read assembly and Annotation Pipeline Tool (RAPT) was a pilot service.
  ☆58Updated 10 months ago
• genomicsITER / NanoDJ
  NanoDJ: A Dockerized Jupyter Notebook for Interactive Oxford Nanopore MinION Sequence Manipulation and Genome Assembly
  ☆51Updated 6 years ago
• borenstein-lab / burrito
  A visualization tool for exploratory data analysis of metagenomic data
  ☆38Updated 3 years ago
• cov-lineages / pangoLEARN
  Store of the trained model for pangolin to access.
  ☆55Updated 3 years ago
• karlnicholas / GeneDoc
  A Full Featured Multiple Sequence Alignment Editor.
  ☆26Updated 7 years ago
• cov-lineages / lineages
  Resources for calling and describing the circulating lineages of SARS-CoV-2
  ☆38Updated 4 years ago
• ncbi / sars2variantcalling
  The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized f…
  ☆14Updated 2 years ago
• Taming-the-BEAST / Introduction-to-BEAST2
  This is a simple introductory tutorial to help you get started with using BEAST2 and its accomplices.
  ☆10Updated 7 months ago
• ncbi / pipelines
  ☆13Updated 7 years ago
• thegenemyers / DAZZ_DB
  The Dazzler Data Base
  ☆36Updated 11 months ago
• PacificBiosciences / pbAA
  ☆27Updated last month
• ncbi / ngs-tools
  ☆108Updated 2 months ago
• JCVenterInstitute / VIGOR4
  VIGOR4
  ☆21Updated 5 months ago