Incremental building of phylogenetic distance trees
☆31Apr 3, 2026Updated last week
Alternatives and similar repositories for tree-tool
Users that are interested in tree-tool are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.☆16Dec 9, 2025Updated 4 months ago
- This repository contains the source code of the R package for EvoGeneX, a software to infer the mode of evolution from the gene expressio…☆29Dec 1, 2025Updated 4 months ago
- Project Manager for NGS data analysis☆31Mar 30, 2026Updated last week
- client app for the gRPC health-checking protocol☆113Jan 31, 2020Updated 6 years ago
- Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a sing…☆28May 10, 2020Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆17Jan 29, 2026Updated 2 months ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- ☆36Apr 17, 2025Updated 11 months ago
- Pytorch implementation of DeePromoter Active sequence detection for promoter(DNA subsequence regulates transcription initiation of the ge…☆13Jul 8, 2021Updated 4 years ago
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆114Mar 5, 2026Updated last month
- NLM Medical Text Indexer (MTI)☆10May 18, 2022Updated 3 years ago
- Service discovery for Finagle cluster with Consul.☆10Sep 27, 2018Updated 7 years ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Nov 20, 2025Updated 4 months ago
- This RAPT repository has been retired as of December 2024. NCBI's Read assembly and Annotation Pipeline Tool (RAPT) was a pilot service.☆58Apr 1, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Documentation for NCBI BLAST AMI☆11Feb 28, 2022Updated 4 years ago
- ☆11Sep 17, 2024Updated last year
- ☆10Mar 5, 2019Updated 7 years ago
- ☆12Jul 14, 2025Updated 8 months ago
- Calculate GC% and GC deviation for circular genomes☆17Oct 15, 2025Updated 5 months ago
- BSMN common data processing pipeline☆11Jun 6, 2025Updated 10 months ago
- ☆29Sep 28, 2021Updated 4 years ago
- BetaMidrash - Torah texts for Android☆12Jul 31, 2016Updated 9 years ago
- General purpose population genetics software☆16Jul 15, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆44May 17, 2025Updated 10 months ago
- Provides embedding interfaces (iFrames, images) for the Sefaria texts☆11Jun 21, 2020Updated 5 years ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆185Dec 16, 2025Updated 3 months ago
- The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized f…☆14Apr 21, 2023Updated 2 years ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆73Dec 4, 2024Updated last year
- various ElasticSearch analyzer plugins useful for analyzing ancient Hebrew☆10Aug 28, 2023Updated 2 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated last month
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Nov 24, 2025Updated 4 months ago
- SKESA assembler☆126Oct 11, 2024Updated last year
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- A list of useful resources in the microbial colony classification and detection, such as datasets, papers, links to projects☆27Oct 1, 2022Updated 3 years ago
- A perpetual Jewish Calendar (golang)☆19Feb 20, 2026Updated last month
- dbGaP data validation tool repo☆14May 12, 2023Updated 2 years ago
- Fast sequencing data quality metrics☆32Apr 1, 2026Updated last week
- Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers.☆26Apr 13, 2025Updated 11 months ago
- Burrows-Wheeler Aligner for x86,x86_64, arm and aarch64 architectures (PC, Raspberry PI, ODROID, M1)☆10Apr 13, 2022Updated 3 years ago
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago