cit-bioinfo / BLCAsubtyping
Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie, TCGA
☆25Updated last year
Related projects ⓘ
Alternatives and complementary repositories for BLCAsubtyping
- ConsensusTME Gene Sets and R Script☆39Updated 5 months ago
- Bostongene cell deconvolution algorithm from RNAseq☆50Updated 10 months ago
- ☆46Updated last year
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆41Updated 9 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆42Updated last year
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 6 years ago
- Analysis notebooks and data for AML hierarchies paper☆15Updated last year
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆19Updated 5 years ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆47Updated 3 years ago
- ☆30Updated 2 years ago
- ☆13Updated 6 years ago
- ☆29Updated 6 years ago
- R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations☆27Updated 4 years ago
- ☆45Updated 9 months ago
- SCDC☆42Updated last year
- Dichotomous of innate immune landscape☆17Updated 5 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆36Updated 3 weeks ago
- scRNA-seq cell type identification☆41Updated 5 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆42Updated 3 years ago
- scWGCNA☆55Updated 2 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 2 years ago
- ☆74Updated 10 months ago
- ☆48Updated 4 months ago
- Code related to the Celligner manuscript☆43Updated 4 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆27Updated last year
- Enrichment Networks for Pathway Enrichment Analysis☆40Updated last year
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated last year
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆31Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago