schultzelab / Shiny-SeqLinks
Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data
☆21Updated 6 years ago
Alternatives and similar repositories for Shiny-Seq
Users that are interested in Shiny-Seq are comparing it to the libraries listed below
Sorting:
- Identify and correct invalid gene symbols☆59Updated 11 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 5 months ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 4 years ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆32Updated 5 years ago
- 🧬 Gene analysis toolkit based on R☆57Updated 9 months ago
- DNA methylation analysis notes from Ming Tang☆90Updated 6 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆42Updated 3 years ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆23Updated 3 months ago
- GLASS consortium☆42Updated 5 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Differential Gene Correlation Analysis☆47Updated last year
- ☆41Updated 7 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- Personal notes about work- and coding-related topics☆20Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- documentation for trackViewer☆29Updated 6 years ago
- collection of notebooks with different cytoscape workflows☆50Updated 2 years ago
- My youtube programming scripts☆58Updated 9 months ago
- ATAC-seq lab for BIOINF545☆24Updated 8 months ago
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆49Updated 2 years ago
- Workshop • Analysis of RNA-seq data☆36Updated last year
- Integrative pathway enrichment analysis of multivariate omics data☆115Updated 3 months ago
- Multiscale embedded gene co-expression network analysis☆56Updated last year
- ☆55Updated 4 years ago
- R package containing useful functions for mutational signature analysis☆84Updated last week
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- This repository contains course materials from JAX-BD2K workshop.☆32Updated 6 years ago