schultzelab / Shiny-Seq
Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data
☆20Updated 5 years ago
Alternatives and similar repositories for Shiny-Seq:
Users that are interested in Shiny-Seq are comparing it to the libraries listed below
- Identify and correct invalid gene symbols☆59Updated 3 months ago
- Workshop • Analysis of RNA-seq data☆35Updated 11 months ago
- 🧬 Gene analysis toolkit based on R☆55Updated last month
- documentation for trackViewer☆29Updated 5 years ago
- ☆40Updated 6 years ago
- Statistical power studies for multi-omics experiments.☆30Updated last month
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated 11 months ago
- Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data☆16Updated 7 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- Development repository for the multiMiR database's R API☆20Updated 5 months ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- Time-Course Multi-Omics data integration☆24Updated 10 months ago
- a tool for summarizing and integrating gene-set analysis results☆16Updated 6 months ago
- workshop website on readthedocs☆19Updated 2 months ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆19Updated last year
- Explore the cancer relevance of your gene list☆49Updated 5 months ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- Filtering of PDX samples for mouse derived reads☆26Updated 2 years ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆28Updated 9 years ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- COMPSRA: a COMprehensive Platform for Small RNA-Seq data Analysis☆16Updated 4 years ago
- This repository contains course materials from JAX-BD2K workshop.☆31Updated 5 years ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- The MBatch R package and Docker image are designed to help assess and correct for batch effects.☆16Updated 8 months ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated 9 months ago
- Differential Count Data Analysis Toolbox☆61Updated last year
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 6 months ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆28Updated last month
- Summer school course materials collection☆25Updated 6 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago