schneebergerlab / fixchr
☆15Updated 3 months ago
Alternatives and similar repositories for fixchr:
Users that are interested in fixchr are comparing it to the libraries listed below
- A genome assembly assessment pipeline.☆37Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- Genome Annotation Pipeline☆35Updated 6 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- Identification of transposable element families from pangenome polymorphisms☆44Updated this week
- ☆29Updated 2 months ago
- ☆27Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆32Updated last month
- ☆76Updated 2 weeks ago
- Statistics and analysis for variation graphs☆38Updated 2 months ago
- Centromics: visualing centromeres with multiple omics data☆18Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆42Updated last year
- assembly evaluation tool☆34Updated 2 years ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆58Updated 2 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆27Updated last month
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆33Updated 3 months ago
- ☆39Updated last year
- ☆32Updated 4 months ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆39Updated 3 months ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 5 months ago
- A shiny application to visualize MCscan result☆35Updated 2 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆47Updated last year
- ☆34Updated 2 years ago
- HiCAT new project☆27Updated last year
- This is a method to find telomeres and centromeres in plants.☆39Updated last year
- A tool for evaluating long-read de novo assembly results☆33Updated 6 months ago
- A tool for evaluate long-read de novo assembly results☆43Updated 6 months ago
- ☆27Updated 3 years ago
- SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.☆18Updated last year