ding-lab / PanCanAtlasGermlineLinks
☆44Updated 6 years ago
Alternatives and similar repositories for PanCanAtlasGermline
Users that are interested in PanCanAtlasGermline are comparing it to the libraries listed below
Sorting:
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 11 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 6 months ago
- Scripts to recreate figures from the SC3 paper☆40Updated 8 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 6 months ago
- ☆38Updated 5 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆51Updated 3 years ago
- Mutational signature analysis for low statistics SNV data☆63Updated 10 months ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆41Updated last year
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆20Updated 2 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Updated 4 years ago
- Identifying recurrent mutations in cancer☆37Updated 4 years ago
- Burden testing against public controls☆50Updated last year
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆49Updated 10 months ago
- An R package to time somatic mutations☆62Updated 4 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- ☆40Updated 7 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- Fork of the Polysolver project☆31Updated 5 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆49Updated 2 months ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- DCC/DAC methylation pipeline source☆55Updated 4 years ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆49Updated last year