jumphone / Bioinformatics
Bioinformatics Workflows
☆20Updated 4 years ago
Alternatives and similar repositories for Bioinformatics:
Users that are interested in Bioinformatics are comparing it to the libraries listed below
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- An R package to time somatic mutations☆61Updated 4 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆33Updated 11 months ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆45Updated 7 months ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆50Updated 2 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- ☆78Updated last year
- RNA editing tests☆17Updated 4 years ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆31Updated 5 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- Scripts to recreate figures from the SC3 paper☆40Updated 8 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆64Updated 3 weeks ago
- ☆33Updated 5 years ago
- Analysis pipeline for ATAC-seq Data☆60Updated 3 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated 9 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆75Updated 3 weeks ago
- DCC/DAC methylation pipeline source☆55Updated 4 years ago
- ☆43Updated 6 years ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆21Updated 2 years ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- ATAC-seq processing pipeline☆32Updated 2 years ago
- ☆38Updated 5 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- Hypoxia associated molecular feature analysis☆35Updated 5 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆70Updated 10 months ago
- ATAC-seq Quality Control☆23Updated 2 months ago