lagelab / quackLinks
Machine learning algorithm to predict biological pathway relationships based on functional genomics networks
☆20Updated 7 years ago
Alternatives and similar repositories for quack
Users that are interested in quack are comparing it to the libraries listed below
Sorting:
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆44Updated last year
- ATAC-seq processing pipeline☆34Updated 3 years ago
- ☆47Updated 9 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- ☆30Updated 7 years ago
- ☆47Updated 5 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆79Updated 7 months ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- GLASS consortium☆42Updated 5 years ago
- ☆41Updated 7 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- ☆50Updated 2 weeks ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- ☆55Updated 4 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- ☆41Updated 3 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- An R package to time somatic mutations☆64Updated 4 years ago