lagelab / quackLinks
Machine learning algorithm to predict biological pathway relationships based on functional genomics networks
☆20Updated 7 years ago
Alternatives and similar repositories for quack
Users that are interested in quack are comparing it to the libraries listed below
Sorting:
- Filtering of PDX samples for mouse derived reads☆28Updated this week
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- ☆48Updated last year
- ATAC-seq processing pipeline☆34Updated 3 years ago
- ☆41Updated 3 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- ☆41Updated 7 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆45Updated 2 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Updated 9 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- ☆47Updated 5 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- binned motif enrichment analysis and visualisation☆43Updated 2 months ago
- R/Bioconductor package for working with 10x scATACseq data☆42Updated 2 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆38Updated 3 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆81Updated last week
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- ATAC-seq Quality Control☆25Updated 2 months ago