Alternatives and similar repositories for transPlotR

Users that are interested in transPlotR are comparing it to the libraries listed below

• scottzijiezhang / m6A-seq_analysis_workflow
  A pipeline to process m6A-seq data and down stream analysis.
  ☆45Updated 5 years ago
• junjunlab / tackPlotR
  An R package to visualize bigwigs.
  ☆31Updated 3 years ago
• benben-miao / TOmicsVis
  Transcriptomics Visualization R package.
  ☆73Updated 3 months ago
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆59Updated 4 years ago
• junjunlab / BioSeqUtils
  Extract Sequence from Genome According to Annotation File
  ☆36Updated 3 months ago
• jianhong / trackViewer
  A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot
  ☆72Updated last month
• 3UTR / DaPars2
  Dynamics analysis of Alternative PolyAdenylation from RNA-seq
  ☆61Updated last year
• maxsonBraunLab / cutTag-pipeline
  Pipeline for Cut&Tag analysis
  ☆23Updated 3 months ago
• junjunlab / RiboProfiler
  Integrating Ribo-SEQ Upstream and Downstream Analysis
  ☆11Updated 9 months ago
• junjunlab / GetTsite
  extract gene TSS/TES site form gencode/ensembl/gencode database GTF file and export bed format file.
  ☆10Updated 3 years ago
• SGDDNB / translational_regulation
  Detection of differential translated genes using Ribo-seq
  ☆16Updated 4 years ago
• tzhu-bio / cisDynet
  An integrated platform for modeling gene-regulatory dynamics and networks
  ☆31Updated last year
• al-mcintyre / merip_reanalysis_scripts
  Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq
  ☆51Updated 5 years ago
• hamidghaedi / Enrichment-Analysis
  From RNA-seq raw reads to enriched pathways by DEGs
  ☆32Updated last year
• dekkerlab / cworld-dekker
  perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)
  ☆67Updated 6 years ago
• stjude / ROSE
  ROSE: RANK ORDERING OF SUPER-ENHANCERS
  ☆50Updated last year
• xryanglab / RiboCode
  release version
  ☆54Updated 3 years ago
• xuzhougeng / RNA-seq-downstream-analysis
  Arabidopsis RNA_-seq downstream analysis shiny app
  ☆30Updated 6 years ago
• MGI-tech-bioinformatics / DNBelab_C_Series_scRNA-analysis-software
  An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.
  ☆35Updated 2 years ago
• shiquan / PISA
  A collection of tools to process single-cell omics datasets.
  ☆48Updated 2 months ago
• shengxin321 / HumanKidney_eQTL_and_snATAC-seq
  codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data
  ☆19Updated 4 years ago
• junjunlab / GetGeneLength
  Extract gene length based on featureCount calculation gene nonredundant exon length method.
  ☆17Updated 3 years ago
• gxiaolab / REDITs
  RNA editing tests
  ☆17Updated 4 years ago
• databio / awesome-atac-analysis
  Links to ATAC-seq analysis tools
  ☆68Updated 3 years ago
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆113Updated 3 weeks ago
• BioSenior / ggVolcano
  The goal of `ggVolcano` is to help users make a beautiful volcano map more easily, including general volcano plot(`ggvolcano`), gradient …
  ☆89Updated 2 years ago
• FredHutch / Galeano-Nino-Bullman-Intratumoral-Microbiota_2022
  Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022
  ☆37Updated last year
• YuLab-SMU / createKEGGdb
  Create KEGG.db Package
  ☆61Updated 2 years ago
• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆25Updated last year
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆67Updated 2 years ago