Alternatives and similar repositories for transPlotR

Users that are interested in transPlotR are comparing it to the libraries listed below

• junjunlab / tackPlotR
  An R package to visualize bigwigs.
  ☆29Updated 2 years ago
• junjunlab / GetGeneLength
  Extract gene length based on featureCount calculation gene nonredundant exon length method.
  ☆17Updated 3 years ago
• junjunlab / RiboProfiler
  Integrating Ribo-SEQ Upstream and Downstream Analysis
  ☆11Updated 7 months ago
• junjunlab / GetTsite
  extract gene TSS/TES site form gencode/ensembl/gencode database GTF file and export bed format file.
  ☆10Updated 3 years ago
• scottzijiezhang / m6A-seq_analysis_workflow
  A pipeline to process m6A-seq data and down stream analysis.
  ☆45Updated 4 years ago
• YutingPKU / SingleCell-Multiomics
  ☆67Updated 2 years ago
• BioSenior / ggVolcano
  The goal of `ggVolcano` is to help users make a beautiful volcano map more easily, including general volcano plot(`ggvolcano`), gradient …
  ☆86Updated 2 years ago
• CebolaLab / ATAC-seq
  Analysis pipeline for ATAC-seq data
  ☆60Updated last year
• TheHumphreysLab / plot1cell
  ☆108Updated 2 months ago
• FredHutch / Galeano-Nino-Bullman-Intratumoral-Microbiota_2022
  Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022
  ☆37Updated last year
• sjdlabgroup / SAHMI
  ☆81Updated 9 months ago
• junjunlab / junjunlab
  ☆21Updated 3 weeks ago
• 3UTR / DaPars2
  Dynamics analysis of Alternative PolyAdenylation from RNA-seq
  ☆59Updated last year
• al-mcintyre / merip_reanalysis_scripts
  Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq
  ☆51Updated 5 years ago
• benben-miao / TOmicsVis
  Transcriptomics Visualization R package.
  ☆72Updated last month
• QuKunLab / ATAC-pipe
  Analysis pipeline for ATAC-seq Data
  ☆61Updated 3 years ago
• maxsonBraunLab / cutTag-pipeline
  Pipeline for Cut&Tag analysis
  ☆21Updated last month
• jianhong / trackViewer
  A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot
  ☆70Updated last month
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆59Updated 4 years ago
• xryanglab / RiboCode
  release version
  ☆53Updated 2 years ago
• junjunlab / BioSeqUtils
  Extract Sequence from Genome According to Annotation File
  ☆33Updated last month
• reskejak / ATAC-seq
  Basic workflow for ATAC-seq analysis
  ☆78Updated last year
• jmzeng1314 / IRseq
  ☆10Updated 7 years ago
• junjunlab / ggSCvis
  Visualizing SingleCell data Using GGplot2
  ☆32Updated 8 months ago
• YuLab-SMU / createKEGGdb
  Create KEGG.db Package
  ☆60Updated 2 years ago
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆67Updated last year
• tzhu-bio / cisDynet
  An integrated platform for modeling gene-regulatory dynamics and networks
  ☆31Updated 10 months ago
• akdess / CaSpER
  ☆85Updated 4 years ago
• cellgeni / STARsolo
  wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq
  ☆57Updated 2 months ago
• stjude / ROSE
  ROSE: RANK ORDERING OF SUPER-ENHANCERS
  ☆47Updated 10 months ago