Alternatives and similar repositories for protestar

Users that are interested in protestar are comparing it to the libraries listed below

• jurgjn / af-protein-universe
  Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…
  ☆27Updated 2 years ago
• KULL-Centre / _2022_functional-sites-cagiada
  ☆23Updated 2 years ago
• TattaBio / gaia-benchmark
  Benchmarking scripts for Gaia
  ☆12Updated 8 months ago
• BioComputingUP / MobiDB-lite
  Long disorder consensus predictor
  ☆17Updated 3 months ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆32Updated 2 years ago
• UCLOrengoGroup / cath-alphaflow
  ☆23Updated last month
• JudeWells / chainsaw
  ☆46Updated last year
• vttresearch / ActSeek
  Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.
  ☆28Updated 2 months ago
• esbgkannan / kibby
  A fast, alignment-free method for estimating sequence conservation using protein sequence embedding
  ☆17Updated 2 years ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆27Updated 3 months ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆59Updated last year
• SNU-CSSB / RF2-Lite
  ☆31Updated last year
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆48Updated 8 months ago
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆41Updated 2 years ago
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated last year
• romainstuder / evosite3d
  ☆21Updated 2 months ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆35Updated 2 years ago
• steineggerlab / mmseqs2-gpu-analysis
  ☆18Updated 7 months ago
• TattaBio / gLM2
  ☆76Updated last year
• Rostlab / EAT
  Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…
  ☆38Updated 4 months ago
• scdantu / pycom
  ☆10Updated 7 months ago
• konstin / knn-for-homology
  Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"
  ☆13Updated 2 years ago
• seanrjohnson / esmologs
  Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.
  ☆16Updated 11 months ago
• minmarg / gtalign_alpha
  GTalign, high-performance protein structure alignment, superposition and search
  ☆52Updated 4 months ago
• bouralab / Prop3D
  A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…
  ☆38Updated last year
• lehner-lab / domainome
  ☆16Updated last year
• PDB-REDO / AlphaBridge
  ☆48Updated 2 weeks ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆43Updated 7 months ago
• MSDLLCpapers / promb
  Humanness of de-novo designed proteins
  ☆34Updated 7 months ago
• the-protein-engineering-tournament / pet-pilot-2023
  Results and data from the pilot round of the Protein Engineering Tournament
  ☆30Updated 9 months ago