rohitsinghlab / raygunView external linksLinks
Template-based protein design with Raygun
☆77Feb 7, 2026Updated last week
Alternatives and similar repositories for raygun
Users that are interested in raygun are comparing it to the libraries listed below
Sorting:
- Official repository for DiffPepBuilder and DiffPepDock tools☆116Oct 24, 2025Updated 3 months ago
- Directed evolution of proteins in sequence space with gradients☆94Oct 18, 2025Updated 3 months ago
- Protein representation and design under a single training scheme☆24Dec 17, 2025Updated last month
- ☆21Oct 26, 2024Updated last year
- ☆121Jul 12, 2024Updated last year
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆155Oct 11, 2023Updated 2 years ago
- ☆47Sep 16, 2024Updated last year
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 3 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆117Aug 3, 2025Updated 6 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆120May 27, 2025Updated 8 months ago
- Structure-conditioned masked language modeling for protein sequence design☆70Jan 31, 2024Updated 2 years ago
- ☆52Dec 10, 2025Updated 2 months ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆67Dec 15, 2025Updated 2 months ago
- protein backbone refinement☆15Sep 12, 2024Updated last year
- Multiple Protein Structure Alignment at Scale with FoldMason☆239Jan 31, 2026Updated 2 weeks ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆91Jun 11, 2025Updated 8 months ago
- Fast protein structure searching or your money back☆118Jan 14, 2026Updated last month
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆225Aug 7, 2025Updated 6 months ago
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆188Jun 24, 2024Updated last year
- Sidechain conditioning and modeling for full-atom protein sequence design☆134Nov 11, 2025Updated 3 months ago
- Finding patch of conserved amino acid sites in 3D structure☆13Apr 13, 2025Updated 10 months ago
- ☆94Oct 14, 2025Updated 4 months ago
- Diffusion-based all-atom protein generative model.☆230Aug 27, 2025Updated 5 months ago
- Aligning protein generative models with experimental fitness☆117Oct 16, 2025Updated 3 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆93Apr 24, 2024Updated last year
- Code for deep learning guided design of dynamic proteins☆32Jul 16, 2024Updated last year
- random colab notebooks for biology☆26Aug 23, 2025Updated 5 months ago
- In silico directed evolution of peptide binders with AlphaFold☆261Jan 5, 2026Updated last month
- Rank binders by structure modeling☆16Mar 10, 2025Updated 11 months ago
- Protein Sequence Evolutionary Information Language Model☆13Oct 5, 2023Updated 2 years ago
- Gibbs sampling for generating protein sequences☆58Jan 17, 2025Updated last year
- Iterative masking algorithm on MSA Transformer to generate synthetic sequences☆28Jan 17, 2024Updated 2 years ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆326Oct 28, 2024Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆85Jun 23, 2024Updated last year
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆150Nov 15, 2024Updated last year
- ☆15Mar 28, 2025Updated 10 months ago
- ☆11Aug 26, 2024Updated last year
- Protein-ligand structure prediction☆238Jul 31, 2025Updated 6 months ago
- A conditionally adapted protein language model for the generation of enzymes☆23Nov 26, 2024Updated last year