FINCHES (First-principle Interactions via CHEmical Specificity) - Python package for predicting chemically-specific molecular interactions for IDRs
☆42Feb 9, 2026Updated 3 weeks ago
Alternatives and similar repositories for finches
Users that are interested in finches are comparing it to the libraries listed below
Sorting:
- ☆19Apr 7, 2025Updated 10 months ago
- Screen interactions with AlphaFold Multimer☆13Mar 10, 2025Updated 11 months ago
- COSMO: COarse-grained Simulation of intrinsically disordered prOteins with openMM☆15Feb 8, 2026Updated 3 weeks ago
- A machine learning based protein disorder predictor.☆27Oct 28, 2025Updated 4 months ago
- ☆32Feb 11, 2026Updated 2 weeks ago
- Next generation sequence parameter library for proteins☆38Feb 18, 2026Updated last week
- UCBShift is a program for predicting chemical shifts for backbone atoms and β-carbon of a protein in solution. It utilizes a machine lear…☆24Jun 10, 2025Updated 8 months ago
- Transfer learning for Mutation Effect Prediction☆17Feb 13, 2024Updated 2 years ago
- AlphaFold version that is extended to integrate diversity parameters for massive sampling.☆16Feb 13, 2026Updated 2 weeks ago
- Protein structural disorder prediction☆20Nov 21, 2024Updated last year
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- STARLING - conSTruction of intrinsicAlly disoRdered proteins ensembles efficientLy vIa multi-dimeNsional Generative models☆38Dec 23, 2025Updated 2 months ago
- ☆40Aug 31, 2021Updated 4 years ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆45May 22, 2025Updated 9 months ago
- ☆47Sep 25, 2024Updated last year
- ML toolset for creating TED: The Encyclopedia of Domains☆26May 29, 2025Updated 9 months ago
- Learning the language of protein-protein interactions☆135Jan 12, 2026Updated last month
- ☆24Nov 14, 2025Updated 3 months ago
- ☆27Jul 3, 2024Updated last year
- ☆25Oct 22, 2025Updated 4 months ago
- ☆25Apr 26, 2023Updated 2 years ago
- ☆26May 19, 2024Updated last year
- Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'☆27Jan 8, 2024Updated 2 years ago
- ☆83Updated this week
- bakerlab pymol scripts☆26Feb 6, 2020Updated 6 years ago
- CLIP-based model for aligning epitopes to immune receptors☆12Apr 30, 2025Updated 10 months ago
- LiveCoMS GROMACS Tutorials Paper☆138Jun 28, 2019Updated 6 years ago
- ☆87Dec 15, 2025Updated 2 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆118Aug 3, 2025Updated 7 months ago
- Fast indexing and search of discontinuous motifs in protein structures☆121Updated this week
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆33Jun 9, 2024Updated last year
- Toolkit for structure-based deep learning on RNA.☆44Feb 9, 2026Updated 3 weeks ago
- Protein stability prediction using rewired protein generative models☆65Dec 25, 2025Updated 2 months ago
- Official repo of the Biomeccanica Multiscala course (prof. Marco A. Deriu) - Master Degree in Biomedical engineering, Politecnico di Tori…☆12Jan 2, 2025Updated last year
- OpenMM plugin that implements (an)isotropic polarizable point dipoles and multipoles up to octopoles.☆11Feb 7, 2025Updated last year
- Home of the public Martini 3 lipid parameters☆19Sep 29, 2025Updated 5 months ago
- Pipeline to calculate icSHAPE score in genome with sliding window strategy☆12Aug 23, 2022Updated 3 years ago
- Protein structure descriptors and alignment based on 3D Zernike moments.☆39Dec 19, 2025Updated 2 months ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Aug 10, 2021Updated 4 years ago