A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
☆99Aug 29, 2023Updated 3 years ago
Alternatives and similar repositories for af2_conformations
Users that are interested in af2_conformations are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆190Oct 7, 2025Updated 10 months ago
- A series of scripts that facilitate the prediction of user-defined protein structural properties using AlphaFold2☆12Aug 28, 2023Updated 3 years ago
- Code for ColabDock paper☆157May 1, 2025Updated last year
- ☆121Dec 7, 2022Updated 3 years ago
- ☆72Feb 13, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆46Jan 10, 2024Updated 2 years ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆88Apr 21, 2026Updated 4 months ago
- ☆17Aug 20, 2024Updated 2 years ago
- ☆18Mar 13, 2024Updated 2 years ago
- ☆74Feb 13, 2026Updated 6 months ago
- Code for our paper "Protein sequence design with a learned potential"☆81Sep 8, 2023Updated 2 years ago
- Protein hallucination and inpainting with RoseTTAFold☆285Mar 30, 2023Updated 3 years ago
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆13Nov 14, 2025Updated 9 months ago
- Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.☆176Sep 8, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆44May 15, 2024Updated 2 years ago
- ☆213Apr 21, 2025Updated last year
- Making Protein Design accessible to all via Google Colab!☆937Aug 28, 2026Updated last week
- Tools to build coarse grained models and perform simulations with OpenMM☆24Aug 12, 2026Updated 3 weeks ago
- A Python Package for Protein Dynamics Analysis☆554Aug 26, 2026Updated last week
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- OmegaFold Release Code☆626Dec 12, 2022Updated 3 years ago
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆425Feb 26, 2026Updated 6 months ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆189Apr 21, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆92Sep 25, 2024Updated last year
- A domain parser for Alphafold models☆49Dec 12, 2023Updated 2 years ago
- ☆45Apr 12, 2024Updated 2 years ago
- ☆86May 18, 2026Updated 3 months ago
- ☆47Sep 16, 2024Updated last year
- Ultra-fast in-silico structure mutation☆37Apr 9, 2025Updated last year
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Aug 10, 2023Updated 3 years ago
- ☆80Feb 26, 2024Updated 2 years ago
- ☆145Jun 3, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Mar 22, 2024Updated 2 years ago
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆69Aug 26, 2025Updated last year
- Code for our paper "Protein sequence design with a learned potential"☆34Aug 5, 2021Updated 5 years ago
- repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model☆307Dec 23, 2025Updated 8 months ago
- ☆321Aug 27, 2026Updated last week
- A simplified implementation of DSSP algorithm for PyTorch and NumPy☆106Jun 9, 2025Updated last year
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆124Aug 14, 2026Updated 3 weeks ago