A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
☆98Aug 29, 2023Updated 2 years ago
Alternatives and similar repositories for af2_conformations
Users that are interested in af2_conformations are comparing it to the libraries listed below
Sorting:
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆175Oct 7, 2025Updated 5 months ago
- A series of scripts that facilitate the prediction of user-defined protein structural properties using AlphaFold2☆11Aug 28, 2023Updated 2 years ago
- ☆118Dec 7, 2022Updated 3 years ago
- Code for ColabDock paper☆151May 1, 2025Updated 10 months ago
- ☆70Feb 13, 2026Updated 3 weeks ago
- ☆43Jan 10, 2024Updated 2 years ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆81Mar 7, 2024Updated 2 years ago
- ☆18Mar 13, 2024Updated last year
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆369Feb 26, 2026Updated last week
- Code for our paper "Protein sequence design with a learned potential"☆82Sep 8, 2023Updated 2 years ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆33Aug 10, 2023Updated 2 years ago
- ☆210Apr 21, 2025Updated 10 months ago
- repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model☆286Dec 23, 2025Updated 2 months ago
- Making Protein Design accessible to all via Google Colab!☆888Feb 27, 2026Updated last week
- Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.☆168Sep 8, 2024Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Mar 22, 2024Updated last year
- ☆47Sep 16, 2024Updated last year
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 3 months ago
- ☆91Sep 25, 2024Updated last year
- ☆74Feb 13, 2026Updated 3 weeks ago
- A Python Package for Protein Dynamics Analysis☆533Feb 13, 2026Updated 3 weeks ago
- NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model☆325Oct 6, 2025Updated 5 months ago
- Structure-conditioned masked language modeling for protein sequence design☆71Jan 31, 2024Updated 2 years ago
- Code for our paper "Protein sequence design with a learned potential"☆34Aug 5, 2021Updated 4 years ago
- Some scripts that I keep using over and over.☆21Jul 5, 2025Updated 8 months ago
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆43May 15, 2024Updated last year
- Protein hallucination and inpainting with RoseTTAFold☆279Mar 30, 2023Updated 2 years ago
- OmegaFold Release Code☆613Dec 12, 2022Updated 3 years ago
- ☆135Jun 3, 2025Updated 9 months ago
- A simplified implementation of DSSP algorithm for PyTorch and NumPy☆97Jun 9, 2025Updated 8 months ago
- Tools to build coarse grained models and perform simulations with OpenMM☆25Dec 16, 2022Updated 3 years ago
- ☆303Feb 27, 2026Updated last week
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆111Updated this week
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆186Apr 21, 2024Updated last year
- Protein-ligand structure prediction☆239Jul 31, 2025Updated 7 months ago
- Modelling protein conformational landscape with Alphafold☆56Aug 29, 2025Updated 6 months ago
- ☆117Jan 3, 2026Updated 2 months ago
- GitHub for AI4PD 2023 Workshop in Chile☆12Oct 12, 2023Updated 2 years ago
- The OpenMM Cookbook and Tutorials☆56Feb 11, 2026Updated 3 weeks ago