Alternatives and similar repositories for af2_conformations

Users that are interested in af2_conformations are comparing it to the libraries listed below

• jproney / AF2Rank
  ☆112Updated 2 years ago
• ShintaroMinami / PyDSSP
  A simplified implementation of DSSP algorithm for PyTorch and NumPy
  ☆93Updated 4 months ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆69Updated last year
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆101Updated 6 months ago
• yehlincho / BoltzDesign1
  ☆210Updated last month
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆162Updated 2 months ago
• dina-lab3D / CombFold
  ☆86Updated last year
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆66Updated 2 months ago
• patrickbryant1 / MoLPC
  Modelling of Large Protein Complexes
  ☆37Updated 2 months ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆58Updated 2 weeks ago
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆110Updated 2 weeks ago
• ELELAB / RosettaDDGPrediction
  ☆77Updated 8 months ago
• rigdenlab / ABCFold
  Scripts to run AlphaFold3, Boltz-1 and Chai-1 with MMseqs2 MSAs and custom templates.
  ☆90Updated 2 weeks ago
• clami66 / AF_unmasked
  Source code and examples for AlphaFold Unmasked
  ☆74Updated 2 weeks ago
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆39Updated last year
• rcsb / py-rcsbsearchapi
  Python interface for the RCSB PDB search API.
  ☆65Updated 6 months ago
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆56Updated 7 months ago
• Kuhlman-Lab / evopro
  ☆88Updated 2 months ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆121Updated 3 months ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆66Updated 3 months ago
• JinyuanSun / DDGScan
  DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein
  ☆48Updated last year
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 2 years ago
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆79Updated 7 months ago
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆86Updated 4 months ago
• Kortemme-Lab / flex_ddG_tutorial
  ☆126Updated 3 years ago
• oxpig / Graphinity
  Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
  ☆50Updated 3 months ago
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆84Updated 4 months ago
• cddlab / alphafold3_tools
  Toolkit for alphafold3 input and output files
  ☆83Updated last week
• bjornwallner / alphafoldv2.2.0
  Open source code for AlphaFold.
  ☆39Updated 2 years ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆54Updated 4 months ago