delalamo / af2_conformationsLinks
A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
☆98Updated 2 years ago
Alternatives and similar repositories for af2_conformations
Users that are interested in af2_conformations are comparing it to the libraries listed below
Sorting:
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆70Updated last year
- A simplified implementation of DSSP algorithm for PyTorch and NumPy☆97Updated 7 months ago
- ☆114Updated 3 years ago
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆171Updated 3 months ago
- Protein folding in Pymol☆133Updated last month
- Modelling of Large Protein Complexes☆39Updated 5 months ago
- ☆89Updated last year
- ☆93Updated 3 months ago
- Structure prediction of alternative protein conformations☆80Updated 10 months ago
- Scripts to run AlphaFold3, Boltz-1 and Chai-1 with MMseqs2 MSAs and custom templates.☆101Updated this week
- Python interface for the RCSB PDB search API.☆65Updated 9 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆88Updated last month
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆60Updated 7 months ago
- Tool for modelling the CDRs of antibodies☆50Updated 3 years ago
- A collection of *fold* tools☆23Updated 3 years ago
- Efficient manipulation of protein structures in Python☆61Updated 3 months ago
- ☆84Updated last month
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆81Updated 5 months ago
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆188Updated 2 weeks ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆132Updated 2 months ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆56Updated 6 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆69Updated 6 months ago
- code for IDR binding paper 2025☆65Updated 11 months ago
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)…☆63Updated 2 months ago
- Open source code for AlphaFold.☆38Updated 3 years ago
- AlphaFold-initiated replica exchange protein docking☆87Updated 7 months ago
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆42Updated last year
- A compilation of deep learning methods for protein design☆97Updated 3 years ago
- Python bindings for the TM-align algorithm and code for protein structure comparison developed by Zhang et al.☆64Updated 2 months ago
- Calculation of interatomic interactions in molecular structures☆83Updated 4 years ago