kkrizanovic / RNAseqEvalLinks
A tool for evaluating RNA seq mapping
☆22Updated 6 years ago
Alternatives and similar repositories for RNAseqEval
Users that are interested in RNAseqEval are comparing it to the libraries listed below
Sorting:
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 9 months ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Integrative analysis of structural variations.☆40Updated 2 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Updated 5 years ago
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- ☆35Updated 4 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- Flexible Bayesian inference of mutational signatures☆38Updated 2 years ago
- ☆26Updated last year
- Adapters for trimming☆30Updated 6 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 6 years ago
- ☆51Updated 6 years ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 6 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 5 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Long read to rMATS☆32Updated 2 years ago
- A program for summarising CpG methylation patterns☆20Updated 9 years ago
- ☆33Updated 3 years ago
- (WIP) best-practices workflow for rare disease☆62Updated last year
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago