lcolladotor / derfinderLinks
Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches
☆45Updated 10 months ago
Alternatives and similar repositories for derfinder
Users that are interested in derfinder are comparing it to the libraries listed below
Sorting:
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 10 months ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆43Updated last week
- Glimma R package☆50Updated last year
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 6 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Updated 11 months ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 8 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆31Updated last month
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 4 years ago
- Vennerable provides Venn diagrams in R. It displays Venn and Euler diagrams for up to 9 different sets and using a variety of geometries.…☆91Updated 4 years ago
- countsimQC - Compare characteristic features of count data sets☆29Updated this week
- Explore design matrices interactively with R/Shiny☆37Updated 3 weeks ago
- Examples of kallisto + sleuth☆11Updated 8 years ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆31Updated 5 months ago
- fastqcr: Quality Control of Sequencing Data☆74Updated 2 years ago
- Genomic plot in trellis layout☆41Updated last year
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Updated 2 years ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- An htmlwidget version of igv, for RStudio and Shiny apps☆38Updated last month
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Bioconductor package for management of multi-assay data☆72Updated 2 months ago
- Independent Hypothesis Weighting☆15Updated 2 years ago
- [DEPRECATED] Docker Images which include a complete installation of all software needed to build all Bioconductor packages☆25Updated 2 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- Transcript quantification import with automatic metadata detection☆67Updated 2 weeks ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 11 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 2 weeks ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆18Updated 7 years ago