Alternatives and similar repositories for derfinder:

Users that are interested in derfinder are comparing it to the libraries listed below

• friend1ws / pmsignature
  R package for extracting mutation signatures from a list of somatic mutations
  ☆37Updated 5 years ago
• seandavi / wdlRunR
  Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources
  ☆34Updated 3 years ago
• nignatiadis / IHW
  Independent Hypothesis Weighting
  ☆15Updated last year
• leekgroup / recount
  R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
  ☆41Updated 3 months ago
• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆44Updated 4 months ago
• csoneson / ExploreModelMatrix
  Explore design matrices interactively with R/Shiny
  ☆37Updated 3 months ago
• federicomarini / ideal
  Interactive Differential Expression AnaLysis - DE made accessible and reproducible
  ☆29Updated 3 weeks ago
• brentp / 450k-analysis-guide
  A Practical (And Opinionated) Guide To Analyzing 450K Data
  ☆35Updated 10 years ago
• csoneson / countsimQC
  countsimQC - Compare characteristic features of count data sets
  ☆27Updated 3 months ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆37Updated 2 years ago
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated 9 months ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆25Updated 2 years ago
• seandavi / Bioc2017BigDataWorkshopSession
  Tutorial for working with cloud infrastructure and AWS from R
  ☆20Updated 7 years ago
• kassambara / fastqcr
  fastqcr: Quality Control of Sequencing Data
  ☆71Updated last year
• mikelove / deseq2_or_edger
  DESeq2 or edgeR
  ☆22Updated 8 years ago
• zhanxw / seqminer
  Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
  ☆30Updated 6 months ago
• kkdey / Logolas
  R package for Enrichment Depletion Logos (EDLogos) and String Logos
  ☆27Updated 6 years ago
• gladkia / igvR
  An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser
  ☆45Updated 4 months ago
• Shians / Glimma
  Glimma R package
  ☆50Updated 7 months ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 5 years ago
• stephaniehicks / bioconductorNotes
  My notes/usage examples for various Bioconductor packages
  ☆15Updated 8 years ago
• pachterlab / bears_analyses
  Examples of kallisto + sleuth
  ☆11Updated 7 years ago
• statOmics / zingeR
  zero-inflated negative binomial gene expression in R
  ☆20Updated 7 years ago
• jokergoo / gtrellis
  Genomic plot in trellis layout
  ☆39Updated last year
• Bioconductor / bioc_git_transition
  This python package is for transitioning bioconductor from SVN to git
  ☆14Updated 2 years ago
• Bioconductor / bioconductor_full
  [DEPRECATED] Docker Images which include a complete installation of all software needed to build all Bioconductor packages
  ☆25Updated 2 years ago
• gkichaev / PAINTOR_V2.1
  ☆22Updated 8 years ago
• waldronlab / MultiAssayExperiment
  Bioconductor package for management of multi-assay data
  ☆71Updated last month
• Bioconductor / BuildABiocWorkshop
  Template for building a bioconductor workshop package using github actions
  ☆20Updated 8 months ago
• corbinq / apex
  Toolkit for QTL mapping and meta-analysis.
  ☆16Updated 2 years ago