RosettaCommons / AF2_peptide_hallucinationLinks
Code for designing binders to flexible peptides with AlphaFold2 Hallucination
☆29Updated 2 years ago
Alternatives and similar repositories for AF2_peptide_hallucination
Users that are interested in AF2_peptide_hallucination are comparing it to the libraries listed below
Sorting:
- protein structure generation with sparse all-atom denoising models☆59Updated 2 months ago
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆49Updated 2 months ago
- ☆37Updated 2 years ago
- ☆47Updated last year
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆61Updated 8 months ago
- Making Protein folding accessible to all!☆25Updated 2 years ago
- Extension of ThermoMPNN for double mutant predictions☆53Updated 4 months ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆66Updated last month
- ☆74Updated 10 months ago
- ☆37Updated 2 years ago
- Physical energy function for protein sequence design☆36Updated 2 years ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆33Updated 2 years ago
- RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences☆27Updated 5 months ago
- Modelling protein conformational landscape with Alphafold☆54Updated 5 months ago
- ☆32Updated last year
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆43Updated last year
- ☆54Updated 2 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆53Updated 2 weeks ago
- Efficient manipulation of protein structures in Python☆63Updated 4 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆47Updated 3 months ago
- ☆28Updated 3 years ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆108Updated 2 weeks ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆36Updated 3 months ago
- ☆94Updated 3 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆32Updated last year
- ☆21Updated last year
- Precise Generation of Conformational Ensembles for Intrinsically Disordered Proteins with IDPFold☆26Updated last year
- ☆40Updated last year
- Scripts to run AlphaFold3, Boltz-1 and Chai-1 with MMseqs2 MSAs and custom templates.☆101Updated this week
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆37Updated last year