Alternatives and similar repositories for AF2_peptide_hallucination

Users that are interested in AF2_peptide_hallucination are comparing it to the libraries listed below

• KULL-Centre / _2024_cagiada_stability
  ☆71Updated 6 months ago
• bene837 / af2seq
  ☆44Updated last year
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆54Updated 4 months ago
• bwicky / oligomer_hallucination
  ☆36Updated last year
• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆40Updated last week
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆43Updated 2 months ago
• PKUliujl / GeoSeqBuilder
  ☆28Updated 8 months ago
• wallnerlab / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆53Updated last month
• KhondamirRustamov / FoldCraft
  ☆41Updated last month
• ohuelab / ColabDesign-cyclic-binder
  ☆35Updated 2 years ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆32Updated 2 years ago
• sokrypton / af2bind
  ☆50Updated 2 months ago
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆24Updated last year
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆39Updated last year
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆35Updated last year
• RosettaCommons / FvHallucinator
  ☆28Updated 2 years ago
• Bitbol-Lab / rag-esm
  RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences
  ☆24Updated last month
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆66Updated 2 months ago
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆45Updated 10 months ago
• Kuhlman-Lab / evopro
  ☆87Updated 2 months ago
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆40Updated 6 months ago
• cytokineking / FreeBindCraft
  BindCraft modified to make PyRosetta use and installation optional: no license needed
  ☆81Updated 2 weeks ago
• skalyaanamoorthy / PSLMs
  ☆20Updated 11 months ago
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆34Updated 2 weeks ago
• tommyhuangthu / EvoEF2
  Physical energy function for protein sequence design
  ☆33Updated 2 years ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated last year
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆58Updated last week
• patrickbryant1 / RareFold
  Structure prediction and design of proteins with noncanonical amino acids
  ☆100Updated last week
• BioComputingUP / ring-pymol
  This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua
  ☆28Updated 3 weeks ago
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆30Updated last year