Alternatives and similar repositories for AF2_peptide_hallucination

Users that are interested in AF2_peptide_hallucination are comparing it to the libraries listed below

• bwicky / oligomer_hallucination
  ☆36Updated last year
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆51Updated last month
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆19Updated last week
• KULL-Centre / _2024_cagiada_stability
  ☆70Updated 3 months ago
• KhondamirRustamov / FoldCraft
  ☆34Updated 2 weeks ago
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆19Updated 5 months ago
• iamysk / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆51Updated 3 weeks ago
• bene837 / af2seq
  ☆43Updated 10 months ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆31Updated last year
• PKUliujl / GeoSeqBuilder
  ☆28Updated 5 months ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆36Updated 2 weeks ago
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆22Updated last year
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆29Updated last week
• johnnytam100 / AlphaCutter
  This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.
  ☆15Updated last year
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆30Updated last year
• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆33Updated last month
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆63Updated 5 months ago
• lauramarie99 / ProtDesign2
  ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN
  ☆18Updated 4 months ago
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆32Updated 7 months ago
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆39Updated last year
• tommyhuangthu / EvoEF2
  Physical energy function for protein sequence design
  ☆31Updated 2 years ago
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆22Updated last year
• ohuelab / ColabDesign-cyclic-binder
  ☆32Updated last year
• Bitbol-Lab / rag-esm
  RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences
  ☆16Updated 3 weeks ago
• RosettaCommons / Rosetta-DL
  A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons
  ☆35Updated 2 years ago
• luwei0917 / AlphaFold3_PPI
  ☆15Updated last year
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆44Updated 7 months ago
• lcbc-epfl / metal-site-prediction
  ☆39Updated last year
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆38Updated 9 months ago
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆35Updated 11 months ago