WaymentSteeleLab / Dyna-1Links
Model for predicting micro-millisecond motions from protein sequence and/or structure
☆53Updated 3 months ago
Alternatives and similar repositories for Dyna-1
Users that are interested in Dyna-1 are comparing it to the libraries listed below
Sorting:
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆49Updated last month
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆44Updated 7 months ago
- ☆67Updated 3 months ago
- ☆43Updated 9 months ago
- ☆67Updated 4 months ago
- A benchmark for 3D biomolecular structure prediction models☆60Updated last month
- code for SeqDance/ESMDance, biophysics-informed protein language models☆37Updated 2 months ago
- ☆50Updated 3 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆69Updated last week
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆62Updated 4 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆37Updated 2 weeks ago
- Metrics for our protein design competitions.☆31Updated 7 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Updated last year
- Generative diverse protein backbones by protein language model☆32Updated 6 months ago
- Code for holographic machine learning of proteins☆24Updated 7 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆78Updated 2 weeks ago
- Structure-conditioned masked language modeling for protein sequence design☆64Updated last year
- Protein Design by Machine Learning guided Directed Evolution☆43Updated 2 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated last year
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆55Updated 3 weeks ago
- Official repository of GENzyme☆51Updated 6 months ago
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆29Updated 10 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆107Updated 4 months ago
- Code for humanization of antibody and nanobody☆42Updated 6 months ago
- Code for the paper "Learning to engineer protein flexibility".☆18Updated 2 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆61Updated last month
- Efficient manipulation of protein structures in Python☆54Updated 7 months ago
- Extension of ThermoMPNN for double mutant predictions☆33Updated 3 months ago
- ☆62Updated last week
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆44Updated 5 months ago