Model for predicting micro-millisecond motions from protein sequence and/or structure
☆78Jun 25, 2026Updated this week
Alternatives and similar repositories for Dyna-1
Users that are interested in Dyna-1 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A drop-in replacement for Rosetta Relax☆29Jan 30, 2026Updated 4 months ago
- ☆40Mar 30, 2025Updated last year
- Pretrained METL models with minimal dependencies☆16Sep 18, 2025Updated 9 months ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆82May 1, 2026Updated last month
- ML-optimized library design with improved fitness and diversity for protein engineering☆37Nov 5, 2025Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- JAX translation of boltz☆28Aug 4, 2025Updated 10 months ago
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Aug 12, 2024Updated last year
- Sidechain conditioning and modeling for full-atom protein sequence design☆142Nov 11, 2025Updated 7 months ago
- ☆134Jun 16, 2026Updated 2 weeks ago
- Potts model-based protein sequence design☆106May 14, 2026Updated last month
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆127May 27, 2025Updated last year
- ESMDynamic repo☆24Apr 28, 2026Updated 2 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆81Jun 22, 2026Updated last week
- ☆47Sep 16, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆193Jun 24, 2024Updated 2 years ago
- mdml: Deep Learning for Molecular Simulations☆55May 17, 2025Updated last year
- Protein stability prediction using rewired protein generative models☆85May 26, 2026Updated last month
- Implementations of the renormalization group-based diffusion model (RGDM).☆15Mar 10, 2025Updated last year
- Multi-domain Distribution Learning for De Novo Drug Design☆161Jan 26, 2026Updated 5 months ago
- Contrastive learning harmonizing protein language models and natural language models☆43Jun 12, 2024Updated 2 years ago
- User friendly and accurate binder design pipeline☆1,145May 11, 2026Updated last month
- Diffusion-based all-atom protein generative model.☆237Aug 27, 2025Updated 10 months ago
- Fast protein backbone generation with SE(3) flow matching.☆326Jul 19, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ELViM is a method for visualizing the energy landscapes of biomolecules simulations.☆14Aug 18, 2025Updated 10 months ago
- Molecular dynamics without molecules: searching the conformational space of proteins with generative neural networks☆10Jun 13, 2022Updated 4 years ago
- Learning the language of protein-protein interactions☆150Jun 15, 2026Updated 2 weeks ago
- Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning☆838Jun 12, 2026Updated 2 weeks ago
- ☆23Nov 6, 2024Updated last year
- A package to create, visualize, and analysis PDB-derived pseudo-ensembles.☆12Jan 7, 2026Updated 5 months ago
- protein structure generation with sparse all-atom denoising models☆63Apr 23, 2026Updated 2 months ago
- PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.☆255Nov 5, 2025Updated 7 months ago
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆126Apr 23, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆133Jul 12, 2024Updated last year
- Geometric Algebra Flow Matching (GAFL) for Protein Backbone Generation☆20May 5, 2026Updated last month
- Scripts to run AlphaFold3, Boltz-2, Chai-1, OpenFold3, Protenix & RF3 with MMseqs2 MSAs and custom templates.☆111Jun 15, 2026Updated 2 weeks ago
- ☆69May 18, 2026Updated last month
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆73Apr 13, 2026Updated 2 months ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆128Jan 28, 2026Updated 5 months ago
- Discovering Interpretable Features in Protein Language Models via Sparse Autoencoders☆293Oct 31, 2025Updated 8 months ago